Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01716 (long intergenic non-protein coding RNA 1716)

Identity

Other alias-
HGNC (Hugo) LINC01716
LocusID (NCBI) 105372682
Atlas_Id 79039
Location 20q13.31  [Link to chromosome band 20q13]
Location_base_pair Starts at 56577563 and ends at 56596126 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01716   52503
Cards
Entrez_Gene (NCBI)LINC01716  105372682  long intergenic non-protein coding RNA 1716
Aliases
GeneCards (Weizmann)LINC01716
Ensembl hg19 (Hinxton)ENSG00000225657 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225657 [Gene_View]  chr20:56577563-56596126 [Contig_View]  LINC01716 [Vega]
ICGC DataPortalENSG00000225657
TCGA cBioPortalLINC01716
AceView (NCBI)LINC01716
Genatlas (Paris)LINC01716
WikiGenes105372682
SOURCE (Princeton)LINC01716
Genetics Home Reference (NIH)LINC01716
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01716  -     chr20:56577563-56596126 +  20q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01716  -     20q13.31   [Description]    (hg19-Feb_2009)
EnsemblLINC01716 - 20q13.31 [CytoView hg19]  LINC01716 - 20q13.31 [CytoView hg38]
Mapping of homologs : NCBILINC01716 [Mapview hg19]  LINC01716 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA970177 CR738035
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01716
Cluster EST : UnigeneHs.640521 [ NCBI ]
CGAP (NCI)Hs.640521
Alternative Splicing GalleryENSG00000225657
Gene ExpressionLINC01716 [ NCBI-GEO ]   LINC01716 [ EBI - ARRAY_EXPRESS ]   LINC01716 [ SEEK ]   LINC01716 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01716 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105372682
GTEX Portal (Tissue expression)LINC01716
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01716
DMDM Disease mutations105372682
Blocks (Seattle)LINC01716
Human Protein AtlasENSG00000225657
Protein Interaction databases
FunCoupENSG00000225657
BioGRIDLINC01716
STRING (EMBL)LINC01716
ZODIACLINC01716
Ontologies - Pathways
Huge Navigator LINC01716 [HugePedia]
snp3D : Map Gene to Disease105372682
BioCentury BCIQLINC01716
ClinGenLINC01716
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105372682
Clinical trialLINC01716
Miscellaneous
canSAR (ICR)LINC01716 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01716
EVEXLINC01716
GoPubMedLINC01716
iHOPLINC01716
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:15:09 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.