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LINC01717 (long intergenic non-protein coding RNA 1717)

Identity

Other alias-
HGNC (Hugo) LINC01717
LocusID (NCBI) 105372893
Atlas_Id 79372
Location 1q32.2  [Link to chromosome band 1q32]
Location_base_pair Starts at 208728688 and ends at 208733184 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC01717   52504
Cards
Entrez_Gene (NCBI)LINC01717  105372893  long intergenic non-protein coding RNA 1717
Aliases
GeneCards (Weizmann)LINC01717
Ensembl hg19 (Hinxton)ENSG00000232812 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000232812 [Gene_View]  chr1:208728688-208733184 [Contig_View]  LINC01717 [Vega]
ICGC DataPortalENSG00000232812
TCGA cBioPortalLINC01717
AceView (NCBI)LINC01717
Genatlas (Paris)LINC01717
WikiGenes105372893
SOURCE (Princeton)LINC01717
Genetics Home Reference (NIH)LINC01717
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01717  -     chr1:208728688-208733184 +  1q32.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01717  -     1q32.2   [Description]    (hg19-Feb_2009)
EnsemblLINC01717 - 1q32.2 [CytoView hg19]  LINC01717 - 1q32.2 [CytoView hg38]
Mapping of homologs : NCBILINC01717 [Mapview hg19]  LINC01717 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA399972 AA401307
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01717
Cluster EST : UnigeneHs.568720 [ NCBI ]
CGAP (NCI)Hs.568720
Alternative Splicing GalleryENSG00000232812
Gene ExpressionLINC01717 [ NCBI-GEO ]   LINC01717 [ EBI - ARRAY_EXPRESS ]   LINC01717 [ SEEK ]   LINC01717 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01717 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105372893
GTEX Portal (Tissue expression)LINC01717
Human Protein AtlasENSG00000232812-LINC01717 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01717
DMDM Disease mutations105372893
Blocks (Seattle)LINC01717
Human Protein Atlas [tissue]ENSG00000232812-LINC01717 [tissue]
Protein Interaction databases
FunCoupENSG00000232812
BioGRIDLINC01717
STRING (EMBL)LINC01717
ZODIACLINC01717
Ontologies - Pathways
Huge Navigator LINC01717 [HugePedia]
snp3D : Map Gene to Disease105372893
BioCentury BCIQLINC01717
ClinGenLINC01717
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105372893
Clinical trialLINC01717
Miscellaneous
canSAR (ICR)LINC01717 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01717
EVEXLINC01717
GoPubMedLINC01717
iHOPLINC01717
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:01:08 CET 2017

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