Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01719 (long intergenic non-protein coding RNA 1719)

Identity

Other alias-
HGNC (Hugo) LINC01719
LocusID (NCBI) 101928979
Atlas_Id 80184
Location 1q21.1  [Link to chromosome band 1q21]
Location_base_pair Starts at 146052596 and ends at 146058799 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01719   52506
Cards
Entrez_Gene (NCBI)LINC01719  101928979  long intergenic non-protein coding RNA 1719
Aliases
GeneCards (Weizmann)LINC01719
Ensembl hg19 (Hinxton)ENSG00000233396 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000233396 [Gene_View]  chr1:146052596-146058799 [Contig_View]  LINC01719 [Vega]
ICGC DataPortalENSG00000233396
TCGA cBioPortalLINC01719
AceView (NCBI)LINC01719
Genatlas (Paris)LINC01719
WikiGenes101928979
SOURCE (Princeton)LINC01719
Genetics Home Reference (NIH)LINC01719
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01719  -     chr1:146052596-146058799 +  1q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01719  -     1q21.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01719 - 1q21.1 [CytoView hg19]  LINC01719 - 1q21.1 [CytoView hg38]
Mapping of homologs : NCBILINC01719 [Mapview hg19]  LINC01719 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW971485 BU179532
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01719
Cluster EST : UnigeneHs.735893 [ NCBI ]
CGAP (NCI)Hs.735893
Alternative Splicing GalleryENSG00000233396
Gene ExpressionLINC01719 [ NCBI-GEO ]   LINC01719 [ EBI - ARRAY_EXPRESS ]   LINC01719 [ SEEK ]   LINC01719 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01719 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101928979
GTEX Portal (Tissue expression)LINC01719
Human Protein AtlasENSG00000233396-LINC01719 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01719
DMDM Disease mutations101928979
Blocks (Seattle)LINC01719
Human Protein Atlas [tissue]ENSG00000233396-LINC01719 [tissue]
Protein Interaction databases
FunCoupENSG00000233396
BioGRIDLINC01719
STRING (EMBL)LINC01719
ZODIACLINC01719
Ontologies - Pathways
Huge Navigator LINC01719 [HugePedia]
snp3D : Map Gene to Disease101928979
BioCentury BCIQLINC01719
ClinGenLINC01719
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101928979
Clinical trialLINC01719
Miscellaneous
canSAR (ICR)LINC01719 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01719
EVEXLINC01719
GoPubMedLINC01719
iHOPLINC01719
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:01:08 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.