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LINC01720 (long intergenic non-protein coding RNA 1720)

Identity

Other alias-
HGNC (Hugo) LINC01720
LocusID (NCBI) 440704
Atlas_Id 79460
Location 1q31.1  [Link to chromosome band 1q31]
Location_base_pair Starts at 190624890 and ends at 190801658 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01720   52507
Cards
Entrez_Gene (NCBI)LINC01720  440704  long intergenic non-protein coding RNA 1720
Aliases
GeneCards (Weizmann)LINC01720
Ensembl hg19 (Hinxton)ENSG00000231175 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231175 [Gene_View]  chr1:190624890-190801658 [Contig_View]  LINC01720 [Vega]
ICGC DataPortalENSG00000231175
TCGA cBioPortalLINC01720
AceView (NCBI)LINC01720
Genatlas (Paris)LINC01720
WikiGenes440704
SOURCE (Princeton)LINC01720
Genetics Home Reference (NIH)LINC01720
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01720  -     chr1:190624890-190801658 +  1q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01720  -     1q31.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01720 - 1q31.1 [CytoView hg19]  LINC01720 - 1q31.1 [CytoView hg38]
Mapping of homologs : NCBILINC01720 [Mapview hg19]  LINC01720 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC042042
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01720
Cluster EST : UnigeneHs.518802 [ NCBI ]
CGAP (NCI)Hs.518802
Alternative Splicing GalleryENSG00000231175
Gene ExpressionLINC01720 [ NCBI-GEO ]   LINC01720 [ EBI - ARRAY_EXPRESS ]   LINC01720 [ SEEK ]   LINC01720 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01720 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)440704
GTEX Portal (Tissue expression)LINC01720
Human Protein AtlasENSG00000231175-LINC01720 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01720
DMDM Disease mutations440704
Blocks (Seattle)LINC01720
Human Protein Atlas [tissue]ENSG00000231175-LINC01720 [tissue]
Protein Interaction databases
FunCoupENSG00000231175
BioGRIDLINC01720
STRING (EMBL)LINC01720
ZODIACLINC01720
Ontologies - Pathways
Huge Navigator LINC01720 [HugePedia]
snp3D : Map Gene to Disease440704
BioCentury BCIQLINC01720
ClinGenLINC01720
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440704
Clinical trialLINC01720
Miscellaneous
canSAR (ICR)LINC01720 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01720
EVEXLINC01720
GoPubMedLINC01720
iHOPLINC01720
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:39:58 CET 2017

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