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LINC01722 (long intergenic non-protein coding RNA 1722)

Identity

Other alias-
HGNC (Hugo) LINC01722
LocusID (NCBI) 101929486
Atlas_Id 80217
Location 20p12.1  [Link to chromosome band 20p12]
Location_base_pair Starts at 12865204 and ends at 12952519 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01722   52510
Cards
Entrez_Gene (NCBI)LINC01722  101929486  long intergenic non-protein coding RNA 1722
Aliases
GeneCards (Weizmann)LINC01722
Ensembl hg19 (Hinxton)ENSG00000233048 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000233048 [Gene_View]  chr20:12865204-12952519 [Contig_View]  LINC01722 [Vega]
ICGC DataPortalENSG00000233048
TCGA cBioPortalLINC01722
AceView (NCBI)LINC01722
Genatlas (Paris)LINC01722
WikiGenes101929486
SOURCE (Princeton)LINC01722
Genetics Home Reference (NIH)LINC01722
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01722  -     chr20:12865204-12952519 -  20p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01722  -     20p12.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01722 - 20p12.1 [CytoView hg19]  LINC01722 - 20p12.1 [CytoView hg38]
Mapping of homologs : NCBILINC01722 [Mapview hg19]  LINC01722 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC036700
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01722
Cluster EST : UnigeneHs.548761 [ NCBI ]
CGAP (NCI)Hs.548761
Alternative Splicing GalleryENSG00000233048
Gene ExpressionLINC01722 [ NCBI-GEO ]   LINC01722 [ EBI - ARRAY_EXPRESS ]   LINC01722 [ SEEK ]   LINC01722 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01722 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101929486
GTEX Portal (Tissue expression)LINC01722
Human Protein AtlasENSG00000233048-LINC01722 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01722
DMDM Disease mutations101929486
Blocks (Seattle)LINC01722
Human Protein Atlas [tissue]ENSG00000233048-LINC01722 [tissue]
Protein Interaction databases
FunCoupENSG00000233048
BioGRIDLINC01722
STRING (EMBL)LINC01722
ZODIACLINC01722
Ontologies - Pathways
Huge Navigator LINC01722 [HugePedia]
snp3D : Map Gene to Disease101929486
BioCentury BCIQLINC01722
ClinGenLINC01722
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101929486
Clinical trialLINC01722
Miscellaneous
canSAR (ICR)LINC01722 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01722
EVEXLINC01722
GoPubMedLINC01722
iHOPLINC01722
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:41:46 CET 2017

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