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LINC01725 (long intergenic non-protein coding RNA 1725)

Identity

Other alias-
HGNC (Hugo) LINC01725
LocusID (NCBI) 101927587
Atlas_Id 79280
Location 1p31.1  [Link to chromosome band 1p31]
Location_base_pair Starts at 83575789 and ends at 83860996 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01725   52513
Cards
Entrez_Gene (NCBI)LINC01725  101927587  long intergenic non-protein coding RNA 1725
Aliases
GeneCards (Weizmann)LINC01725
Ensembl hg19 (Hinxton)ENSG00000233008 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000233008 [Gene_View]  chr1:83575789-83860996 [Contig_View]  LINC01725 [Vega]
ICGC DataPortalENSG00000233008
TCGA cBioPortalLINC01725
AceView (NCBI)LINC01725
Genatlas (Paris)LINC01725
WikiGenes101927587
SOURCE (Princeton)LINC01725
Genetics Home Reference (NIH)LINC01725
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01725  -     chr1:83575789-83860996 -  1p31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01725  -     1p31.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01725 - 1p31.1 [CytoView hg19]  LINC01725 - 1p31.1 [CytoView hg38]
Mapping of homologs : NCBILINC01725 [Mapview hg19]  LINC01725 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC036594
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01725
Cluster EST : UnigeneHs.621230 [ NCBI ]
CGAP (NCI)Hs.621230
Alternative Splicing GalleryENSG00000233008
Gene ExpressionLINC01725 [ NCBI-GEO ]   LINC01725 [ EBI - ARRAY_EXPRESS ]   LINC01725 [ SEEK ]   LINC01725 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01725 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927587
GTEX Portal (Tissue expression)LINC01725
Human Protein AtlasENSG00000233008-LINC01725 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01725
DMDM Disease mutations101927587
Blocks (Seattle)LINC01725
Human Protein Atlas [tissue]ENSG00000233008-LINC01725 [tissue]
Protein Interaction databases
FunCoupENSG00000233008
BioGRIDLINC01725
STRING (EMBL)LINC01725
ZODIACLINC01725
Ontologies - Pathways
Huge Navigator LINC01725 [HugePedia]
snp3D : Map Gene to Disease101927587
BioCentury BCIQLINC01725
ClinGenLINC01725
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927587
Clinical trialLINC01725
Miscellaneous
canSAR (ICR)LINC01725 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01725
EVEXLINC01725
GoPubMedLINC01725
iHOPLINC01725
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:01:09 CET 2017

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