Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01727 (long intergenic non-protein coding RNA 1727)

Identity

Other alias-
HGNC (Hugo) LINC01727
LocusID (NCBI) 101929625
Atlas_Id 79929
Location 20p11.22  [Link to chromosome band 20p11]
Location_base_pair Starts at 21570024 and ends at 21615722 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01727   52515
Cards
Entrez_Gene (NCBI)LINC01727  101929625  long intergenic non-protein coding RNA 1727
Aliases
GeneCards (Weizmann)LINC01727
Ensembl hg19 (Hinxton)ENSG00000279082 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000279082 [Gene_View]  chr20:21570024-21615722 [Contig_View]  LINC01727 [Vega]
ICGC DataPortalENSG00000279082
TCGA cBioPortalLINC01727
AceView (NCBI)LINC01727
Genatlas (Paris)LINC01727
WikiGenes101929625
SOURCE (Princeton)LINC01727
Genetics Home Reference (NIH)LINC01727
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01727  -     chr20:21570024-21615722 +  20p11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01727  -     20p11.22   [Description]    (hg19-Feb_2009)
EnsemblLINC01727 - 20p11.22 [CytoView hg19]  LINC01727 - 20p11.22 [CytoView hg38]
Mapping of homologs : NCBILINC01727 [Mapview hg19]  LINC01727 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DA089649
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01727
Cluster EST : UnigeneHs.542413 [ NCBI ]
CGAP (NCI)Hs.542413
Alternative Splicing GalleryENSG00000279082
Gene ExpressionLINC01727 [ NCBI-GEO ]   LINC01727 [ EBI - ARRAY_EXPRESS ]   LINC01727 [ SEEK ]   LINC01727 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01727 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101929625
GTEX Portal (Tissue expression)LINC01727
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01727
DMDM Disease mutations101929625
Blocks (Seattle)LINC01727
Human Protein AtlasENSG00000279082
Protein Interaction databases
FunCoupENSG00000279082
BioGRIDLINC01727
STRING (EMBL)LINC01727
ZODIACLINC01727
Ontologies - Pathways
Huge Navigator LINC01727 [HugePedia]
snp3D : Map Gene to Disease101929625
BioCentury BCIQLINC01727
ClinGenLINC01727
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101929625
Clinical trialLINC01727
Miscellaneous
canSAR (ICR)LINC01727 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01727
EVEXLINC01727
GoPubMedLINC01727
iHOPLINC01727
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:15:11 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.