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LINC01739 (long intergenic non-protein coding RNA 1739)

Identity

Other alias-
HGNC (Hugo) LINC01739
LocusID (NCBI) 105378769
Atlas_Id 79912
Location 1p31.3  [Link to chromosome band 1p31]
Location_base_pair Starts at 63000497 and ends at 63011268 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01739   52527
Cards
Entrez_Gene (NCBI)LINC01739  105378769  long intergenic non-protein coding RNA 1739
Aliases
GeneCards (Weizmann)LINC01739
Ensembl hg19 (Hinxton)ENSG00000229537 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000229537 [Gene_View]  chr1:63000497-63011268 [Contig_View]  LINC01739 [Vega]
ICGC DataPortalENSG00000229537
TCGA cBioPortalLINC01739
AceView (NCBI)LINC01739
Genatlas (Paris)LINC01739
WikiGenes105378769
SOURCE (Princeton)LINC01739
Genetics Home Reference (NIH)LINC01739
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01739  -     chr1:63000497-63011268 -  1p31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01739  -     1p31.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01739 - 1p31.3 [CytoView hg19]  LINC01739 - 1p31.3 [CytoView hg38]
Mapping of homologs : NCBILINC01739 [Mapview hg19]  LINC01739 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW450266
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01739
Cluster EST : UnigeneHs.435002 [ NCBI ]
CGAP (NCI)Hs.435002
Alternative Splicing GalleryENSG00000229537
Gene ExpressionLINC01739 [ NCBI-GEO ]   LINC01739 [ EBI - ARRAY_EXPRESS ]   LINC01739 [ SEEK ]   LINC01739 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01739 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105378769
GTEX Portal (Tissue expression)LINC01739
Human Protein AtlasENSG00000229537-LINC01739 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01739
DMDM Disease mutations105378769
Blocks (Seattle)LINC01739
Human Protein Atlas [tissue]ENSG00000229537-LINC01739 [tissue]
Protein Interaction databases
FunCoupENSG00000229537
BioGRIDLINC01739
STRING (EMBL)LINC01739
ZODIACLINC01739
Ontologies - Pathways
Huge Navigator LINC01739 [HugePedia]
snp3D : Map Gene to Disease105378769
BioCentury BCIQLINC01739
ClinGenLINC01739
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105378769
Clinical trialLINC01739
Miscellaneous
canSAR (ICR)LINC01739 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01739
EVEXLINC01739
GoPubMedLINC01739
iHOPLINC01739
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:01:10 CET 2017

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