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LINC01754 (long intergenic non-protein coding RNA 1754)

Identity

Other alias-
HGNC (Hugo) LINC01754
LocusID (NCBI) 102723442
Atlas_Id 79842
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 47382766 and ends at 47411394 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01754   52542
Cards
Entrez_Gene (NCBI)LINC01754  102723442  long intergenic non-protein coding RNA 1754
Aliases
GeneCards (Weizmann)LINC01754
Ensembl hg19 (Hinxton)ENSG00000224565 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000224565 [Gene_View]  chr20:47382766-47411394 [Contig_View]  LINC01754 [Vega]
ICGC DataPortalENSG00000224565
TCGA cBioPortalLINC01754
AceView (NCBI)LINC01754
Genatlas (Paris)LINC01754
WikiGenes102723442
SOURCE (Princeton)LINC01754
Genetics Home Reference (NIH)LINC01754
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01754  -     chr20:47382766-47411394 -  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01754  -     20q13.12   [Description]    (hg19-Feb_2009)
EnsemblLINC01754 - 20q13.12 [CytoView hg19]  LINC01754 - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBILINC01754 [Mapview hg19]  LINC01754 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01754
Alternative Splicing GalleryENSG00000224565
Gene ExpressionLINC01754 [ NCBI-GEO ]   LINC01754 [ EBI - ARRAY_EXPRESS ]   LINC01754 [ SEEK ]   LINC01754 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01754 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102723442
GTEX Portal (Tissue expression)LINC01754
Human Protein AtlasENSG00000224565-LINC01754 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01754
DMDM Disease mutations102723442
Blocks (Seattle)LINC01754
Human Protein Atlas [tissue]ENSG00000224565-LINC01754 [tissue]
Protein Interaction databases
FunCoupENSG00000224565
BioGRIDLINC01754
STRING (EMBL)LINC01754
ZODIACLINC01754
Ontologies - Pathways
Huge Navigator LINC01754 [HugePedia]
snp3D : Map Gene to Disease102723442
BioCentury BCIQLINC01754
ClinGenLINC01754
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102723442
Clinical trialLINC01754
Miscellaneous
canSAR (ICR)LINC01754 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01754
EVEXLINC01754
GoPubMedLINC01754
iHOPLINC01754
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:41:49 CET 2017

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