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LINC01771 (long intergenic non-protein coding RNA 1771)

Identity

Other alias-
HGNC (Hugo) LINC01771
LocusID (NCBI) 105378732
Atlas_Id 78953
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 53328233 and ends at 53336509 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01771   52561
Cards
Entrez_Gene (NCBI)LINC01771  105378732  long intergenic non-protein coding RNA 1771
Aliases
GeneCards (Weizmann)LINC01771
Ensembl hg19 (Hinxton)ENSG00000225675 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225675 [Gene_View]  chr1:53328233-53336509 [Contig_View]  LINC01771 [Vega]
ICGC DataPortalENSG00000225675
TCGA cBioPortalLINC01771
AceView (NCBI)LINC01771
Genatlas (Paris)LINC01771
WikiGenes105378732
SOURCE (Princeton)LINC01771
Genetics Home Reference (NIH)LINC01771
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01771  -     chr1:53328233-53336509 +  1p32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01771  -     1p32.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01771 - 1p32.3 [CytoView hg19]  LINC01771 - 1p32.3 [CytoView hg38]
Mapping of homologs : NCBILINC01771 [Mapview hg19]  LINC01771 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097571 C15835 DB038107
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01771
Cluster EST : UnigeneHs.118609 [ NCBI ]
CGAP (NCI)Hs.118609
Alternative Splicing GalleryENSG00000225675
Gene ExpressionLINC01771 [ NCBI-GEO ]   LINC01771 [ EBI - ARRAY_EXPRESS ]   LINC01771 [ SEEK ]   LINC01771 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01771 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105378732
GTEX Portal (Tissue expression)LINC01771
Human Protein AtlasENSG00000225675-LINC01771 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01771
DMDM Disease mutations105378732
Blocks (Seattle)LINC01771
Human Protein Atlas [tissue]ENSG00000225675-LINC01771 [tissue]
Protein Interaction databases
FunCoupENSG00000225675
BioGRIDLINC01771
STRING (EMBL)LINC01771
ZODIACLINC01771
Ontologies - Pathways
Huge Navigator LINC01771 [HugePedia]
snp3D : Map Gene to Disease105378732
BioCentury BCIQLINC01771
ClinGenLINC01771
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105378732
Clinical trialLINC01771
Miscellaneous
canSAR (ICR)LINC01771 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01771
EVEXLINC01771
GoPubMedLINC01771
iHOPLINC01771
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:01:14 CET 2017

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