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LINC01772 (long intergenic non-protein coding RNA 1772)

Identity

Alias_symbol (synonym)ENSG00000226029
Other alias-
HGNC (Hugo) LINC01772
LocusID (NCBI) 107984921
Atlas_Id 80012
Location 1p36.13  [Link to chromosome band 1p36]
Location_base_pair Starts at 16460948 and ends at 16468481 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC01772   52562
Cards
Entrez_Gene (NCBI)LINC01772  107984921  long intergenic non-protein coding RNA 1772
Aliases
GeneCards (Weizmann)LINC01772
Ensembl hg19 (Hinxton)ENSG00000226029 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000226029 [Gene_View]  chr1:16460948-16468481 [Contig_View]  LINC01772 [Vega]
ICGC DataPortalENSG00000226029
TCGA cBioPortalLINC01772
AceView (NCBI)LINC01772
Genatlas (Paris)LINC01772
WikiGenes107984921
SOURCE (Princeton)LINC01772
Genetics Home Reference (NIH)LINC01772
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01772  -     chr1:16460948-16468481 +  1p36.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01772  -     1p36.13   [Description]    (hg19-Feb_2009)
EnsemblLINC01772 - 1p36.13 [CytoView hg19]  LINC01772 - 1p36.13 [CytoView hg38]
Mapping of homologs : NCBILINC01772 [Mapview hg19]  LINC01772 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097742
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01772
Cluster EST : UnigeneHs.528312 [ NCBI ]
CGAP (NCI)Hs.528312
Alternative Splicing GalleryENSG00000226029
Gene ExpressionLINC01772 [ NCBI-GEO ]   LINC01772 [ EBI - ARRAY_EXPRESS ]   LINC01772 [ SEEK ]   LINC01772 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01772 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)107984921
GTEX Portal (Tissue expression)LINC01772
Human Protein AtlasENSG00000226029-LINC01772 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01772
DMDM Disease mutations107984921
Blocks (Seattle)LINC01772
Human Protein Atlas [tissue]ENSG00000226029-LINC01772 [tissue]
Protein Interaction databases
FunCoupENSG00000226029
BioGRIDLINC01772
STRING (EMBL)LINC01772
ZODIACLINC01772
Ontologies - Pathways
Huge Navigator LINC01772 [HugePedia]
snp3D : Map Gene to Disease107984921
BioCentury BCIQLINC01772
ClinGenLINC01772
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD107984921
Clinical trialLINC01772
Miscellaneous
canSAR (ICR)LINC01772 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01772
EVEXLINC01772
GoPubMedLINC01772
iHOPLINC01772
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:01:14 CET 2017

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