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LINC01777 (long intergenic non-protein coding RNA 1777)

Identity

Other alias-
HGNC (Hugo) LINC01777
LocusID (NCBI) 284661
Atlas_Id 79302
Location 1p36.32  [Link to chromosome band 1p36]
Location_base_pair Starts at 4412051 and ends at 4424684 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01777   52567
Cards
Entrez_Gene (NCBI)LINC01777  284661  long intergenic non-protein coding RNA 1777
Aliases
GeneCards (Weizmann)LINC01777
Ensembl hg19 (Hinxton)ENSG00000235054 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235054 [Gene_View]  chr1:4412051-4424684 [Contig_View]  LINC01777 [Vega]
ICGC DataPortalENSG00000235054
TCGA cBioPortalLINC01777
AceView (NCBI)LINC01777
Genatlas (Paris)LINC01777
WikiGenes284661
SOURCE (Princeton)LINC01777
Genetics Home Reference (NIH)LINC01777
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01777  -     chr1:4412051-4424684 +  1p36.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01777  -     1p36.32   [Description]    (hg19-Feb_2009)
EnsemblLINC01777 - 1p36.32 [CytoView hg19]  LINC01777 - 1p36.32 [CytoView hg38]
Mapping of homologs : NCBILINC01777 [Mapview hg19]  LINC01777 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093498 BC128213 BC128214
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01777
Cluster EST : UnigeneHs.278112 [ NCBI ]
CGAP (NCI)Hs.278112
Alternative Splicing GalleryENSG00000235054
Gene ExpressionLINC01777 [ NCBI-GEO ]   LINC01777 [ EBI - ARRAY_EXPRESS ]   LINC01777 [ SEEK ]   LINC01777 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01777 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)284661
GTEX Portal (Tissue expression)LINC01777
Human Protein AtlasENSG00000235054-LINC01777 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01777
DMDM Disease mutations284661
Blocks (Seattle)LINC01777
Human Protein Atlas [tissue]ENSG00000235054-LINC01777 [tissue]
Protein Interaction databases
FunCoupENSG00000235054
BioGRIDLINC01777
STRING (EMBL)LINC01777
ZODIACLINC01777
Ontologies - Pathways
Huge Navigator LINC01777 [HugePedia]
snp3D : Map Gene to Disease284661
BioCentury BCIQLINC01777
ClinGenLINC01777
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284661
Clinical trialLINC01777
Miscellaneous
canSAR (ICR)LINC01777 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01777
EVEXLINC01777
GoPubMedLINC01777
iHOPLINC01777
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:40:09 CET 2017

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