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LINC01778 (long intergenic non-protein coding RNA 1778)

Identity

Other alias-
HGNC (Hugo) LINC01778
LocusID (NCBI) 105378622
Atlas_Id 78922
Location 1p35.2  [Link to chromosome band 1p35]
Location_base_pair Starts at 30824652 and ends at 30834284 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01778   52568
Cards
Entrez_Gene (NCBI)LINC01778  105378622  long intergenic non-protein coding RNA 1778
Aliases
GeneCards (Weizmann)LINC01778
Ensembl hg19 (Hinxton)ENSG00000223382 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000223382 [Gene_View]  chr1:30824652-30834284 [Contig_View]  LINC01778 [Vega]
ICGC DataPortalENSG00000223382
TCGA cBioPortalLINC01778
AceView (NCBI)LINC01778
Genatlas (Paris)LINC01778
WikiGenes105378622
SOURCE (Princeton)LINC01778
Genetics Home Reference (NIH)LINC01778
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01778  -     chr1:30824652-30834284 +  1p35.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01778  -     1p35.2   [Description]    (hg19-Feb_2009)
EnsemblLINC01778 - 1p35.2 [CytoView hg19]  LINC01778 - 1p35.2 [CytoView hg38]
Mapping of homologs : NCBILINC01778 [Mapview hg19]  LINC01778 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI869071 BX113853
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01778
Cluster EST : UnigeneHs.635891 [ NCBI ]
CGAP (NCI)Hs.635891
Alternative Splicing GalleryENSG00000223382
Gene ExpressionLINC01778 [ NCBI-GEO ]   LINC01778 [ EBI - ARRAY_EXPRESS ]   LINC01778 [ SEEK ]   LINC01778 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01778 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105378622
GTEX Portal (Tissue expression)LINC01778
Human Protein AtlasENSG00000223382-LINC01778 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01778
DMDM Disease mutations105378622
Blocks (Seattle)LINC01778
Human Protein Atlas [tissue]ENSG00000223382-LINC01778 [tissue]
Protein Interaction databases
FunCoupENSG00000223382
BioGRIDLINC01778
STRING (EMBL)LINC01778
ZODIACLINC01778
Ontologies - Pathways
Huge Navigator LINC01778 [HugePedia]
snp3D : Map Gene to Disease105378622
BioCentury BCIQLINC01778
ClinGenLINC01778
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105378622
Clinical trialLINC01778
Miscellaneous
canSAR (ICR)LINC01778 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01778
EVEXLINC01778
GoPubMedLINC01778
iHOPLINC01778
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:01:15 CET 2017

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