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LINC01780 (long intergenic non-protein coding RNA 1780)

Identity

Other alias-
HGNC (Hugo) LINC01780
LocusID (NCBI) 105378934
Atlas_Id 79396
Location 1p12  [Link to chromosome band 1p12]
Location_base_pair Starts at 119328252 and ends at 119356182 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01780   52570
Cards
Entrez_Gene (NCBI)LINC01780  105378934  long intergenic non-protein coding RNA 1780
Aliases
GeneCards (Weizmann)LINC01780
Ensembl hg19 (Hinxton)ENSG00000232650 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000232650 [Gene_View]  chr1:119328252-119356182 [Contig_View]  LINC01780 [Vega]
ICGC DataPortalENSG00000232650
TCGA cBioPortalLINC01780
AceView (NCBI)LINC01780
Genatlas (Paris)LINC01780
WikiGenes105378934
SOURCE (Princeton)LINC01780
Genetics Home Reference (NIH)LINC01780
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01780  -     chr1:119328252-119356182 +  1p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01780  -     1p12   [Description]    (hg19-Feb_2009)
EnsemblLINC01780 - 1p12 [CytoView hg19]  LINC01780 - 1p12 [CytoView hg38]
Mapping of homologs : NCBILINC01780 [Mapview hg19]  LINC01780 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01780
Alternative Splicing GalleryENSG00000232650
Gene ExpressionLINC01780 [ NCBI-GEO ]   LINC01780 [ EBI - ARRAY_EXPRESS ]   LINC01780 [ SEEK ]   LINC01780 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01780 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105378934
GTEX Portal (Tissue expression)LINC01780
Human Protein AtlasENSG00000232650-LINC01780 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01780
DMDM Disease mutations105378934
Blocks (Seattle)LINC01780
Human Protein Atlas [tissue]ENSG00000232650-LINC01780 [tissue]
Protein Interaction databases
FunCoupENSG00000232650
BioGRIDLINC01780
STRING (EMBL)LINC01780
ZODIACLINC01780
Ontologies - Pathways
Huge Navigator LINC01780 [HugePedia]
snp3D : Map Gene to Disease105378934
BioCentury BCIQLINC01780
ClinGenLINC01780
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105378934
Clinical trialLINC01780
Miscellaneous
canSAR (ICR)LINC01780 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01780
EVEXLINC01780
GoPubMedLINC01780
iHOPLINC01780
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:01:15 CET 2017

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