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LINC01784 (long intergenic non-protein coding RNA 1784)

Identity

Other alias-
HGNC (Hugo) LINC01784
LocusID (NCBI) 105376745
Atlas_Id 79603
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 12822686 and ends at 12823223 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01784   52574
Cards
Entrez_Gene (NCBI)LINC01784  105376745  long intergenic non-protein coding RNA 1784
Aliases
GeneCards (Weizmann)LINC01784
Ensembl hg19 (Hinxton)ENSG00000228338 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000228338 [Gene_View]  chr1:12822686-12823223 [Contig_View]  LINC01784 [Vega]
ICGC DataPortalENSG00000228338
TCGA cBioPortalLINC01784
AceView (NCBI)LINC01784
Genatlas (Paris)LINC01784
WikiGenes105376745
SOURCE (Princeton)LINC01784
Genetics Home Reference (NIH)LINC01784
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01784  -     chr1:12822686-12823223 -  1p36.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01784  -     1p36.21   [Description]    (hg19-Feb_2009)
EnsemblLINC01784 - 1p36.21 [CytoView hg19]  LINC01784 - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBILINC01784 [Mapview hg19]  LINC01784 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA397525 HY037568
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01784
Cluster EST : UnigeneHs.443377 [ NCBI ]
CGAP (NCI)Hs.443377
Alternative Splicing GalleryENSG00000228338
Gene ExpressionLINC01784 [ NCBI-GEO ]   LINC01784 [ EBI - ARRAY_EXPRESS ]   LINC01784 [ SEEK ]   LINC01784 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01784 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105376745
GTEX Portal (Tissue expression)LINC01784
Human Protein AtlasENSG00000228338-LINC01784 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01784
DMDM Disease mutations105376745
Blocks (Seattle)LINC01784
Human Protein Atlas [tissue]ENSG00000228338-LINC01784 [tissue]
Protein Interaction databases
FunCoupENSG00000228338
BioGRIDLINC01784
STRING (EMBL)LINC01784
ZODIACLINC01784
Ontologies - Pathways
Huge Navigator LINC01784 [HugePedia]
snp3D : Map Gene to Disease105376745
BioCentury BCIQLINC01784
ClinGenLINC01784
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105376745
Clinical trialLINC01784
Miscellaneous
canSAR (ICR)LINC01784 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01784
EVEXLINC01784
GoPubMedLINC01784
iHOPLINC01784
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:01:16 CET 2017

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