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LINC01787 (long intergenic non-protein coding RNA 1787)

Identity

Other alias-
HGNC (Hugo) LINC01787
LocusID (NCBI) 101928241
Atlas_Id 79401
Location 1p21.3  [Link to chromosome band 1p21]
Location_base_pair Starts at 96254069 and ends at 96374125 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01787   52576
Cards
Entrez_Gene (NCBI)LINC01787  101928241  long intergenic non-protein coding RNA 1787
Aliases
GeneCards (Weizmann)LINC01787
Ensembl hg19 (Hinxton)ENSG00000231987 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231987 [Gene_View]  chr1:96254069-96374125 [Contig_View]  LINC01787 [Vega]
ICGC DataPortalENSG00000231987
TCGA cBioPortalLINC01787
AceView (NCBI)LINC01787
Genatlas (Paris)LINC01787
WikiGenes101928241
SOURCE (Princeton)LINC01787
Genetics Home Reference (NIH)LINC01787
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01787  -     chr1:96254069-96374125 -  1p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01787  -     1p21.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01787 - 1p21.3 [CytoView hg19]  LINC01787 - 1p21.3 [CytoView hg38]
Mapping of homologs : NCBILINC01787 [Mapview hg19]  LINC01787 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056049
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01787
Cluster EST : UnigeneHs.514137 [ NCBI ]
CGAP (NCI)Hs.514137
Alternative Splicing GalleryENSG00000231987
Gene ExpressionLINC01787 [ NCBI-GEO ]   LINC01787 [ EBI - ARRAY_EXPRESS ]   LINC01787 [ SEEK ]   LINC01787 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01787 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101928241
GTEX Portal (Tissue expression)LINC01787
Human Protein AtlasENSG00000231987-LINC01787 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01787
DMDM Disease mutations101928241
Blocks (Seattle)LINC01787
Human Protein Atlas [tissue]ENSG00000231987-LINC01787 [tissue]
Protein Interaction databases
FunCoupENSG00000231987
BioGRIDLINC01787
STRING (EMBL)LINC01787
ZODIACLINC01787
Ontologies - Pathways
Huge Navigator LINC01787 [HugePedia]
snp3D : Map Gene to Disease101928241
BioCentury BCIQLINC01787
ClinGenLINC01787
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101928241
Clinical trialLINC01787
Miscellaneous
canSAR (ICR)LINC01787 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01787
EVEXLINC01787
GoPubMedLINC01787
iHOPLINC01787
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:01:16 CET 2017

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