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LINC01788 (long intergenic non-protein coding RNA 1788)

Identity

Other alias-
HGNC (Hugo) LINC01788
LocusID (NCBI) 101927244
Atlas_Id 79830
Location 1p31.1  [Link to chromosome band 1p31]
Location_base_pair Starts at 70706453 and ends at 70786468 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01788   52577
Cards
Entrez_Gene (NCBI)LINC01788  101927244  long intergenic non-protein coding RNA 1788
Aliases
GeneCards (Weizmann)LINC01788
Ensembl hg19 (Hinxton)ENSG00000229051 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000229051 [Gene_View]  chr1:70706453-70786468 [Contig_View]  LINC01788 [Vega]
ICGC DataPortalENSG00000229051
TCGA cBioPortalLINC01788
AceView (NCBI)LINC01788
Genatlas (Paris)LINC01788
WikiGenes101927244
SOURCE (Princeton)LINC01788
Genetics Home Reference (NIH)LINC01788
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01788  -     chr1:70706453-70786468 +  1p31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01788  -     1p31.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01788 - 1p31.1 [CytoView hg19]  LINC01788 - 1p31.1 [CytoView hg38]
Mapping of homologs : NCBILINC01788 [Mapview hg19]  LINC01788 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC041441 DA634876
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01788
Cluster EST : UnigeneHs.588768 [ NCBI ]
CGAP (NCI)Hs.588768
Alternative Splicing GalleryENSG00000229051
Gene ExpressionLINC01788 [ NCBI-GEO ]   LINC01788 [ EBI - ARRAY_EXPRESS ]   LINC01788 [ SEEK ]   LINC01788 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01788 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927244
GTEX Portal (Tissue expression)LINC01788
Human Protein AtlasENSG00000229051-LINC01788 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01788
DMDM Disease mutations101927244
Blocks (Seattle)LINC01788
Human Protein Atlas [tissue]ENSG00000229051-LINC01788 [tissue]
Protein Interaction databases
FunCoupENSG00000229051
BioGRIDLINC01788
STRING (EMBL)LINC01788
ZODIACLINC01788
Ontologies - Pathways
Huge Navigator LINC01788 [HugePedia]
snp3D : Map Gene to Disease101927244
BioCentury BCIQLINC01788
ClinGenLINC01788
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927244
Clinical trialLINC01788
Miscellaneous
canSAR (ICR)LINC01788 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01788
EVEXLINC01788
GoPubMedLINC01788
iHOPLINC01788
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:01:16 CET 2017

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