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LINC01790 (long intergenic non-protein coding RNA 1790)

Identity

Other alias-
HGNC (Hugo) LINC01790
LocusID (NCBI) 101927431
Atlas_Id 79560
Location 2q32.3  [Link to chromosome band 2q32]
Location_base_pair Starts at 194730595 and ends at 194761435 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01790   52579
Cards
Entrez_Gene (NCBI)LINC01790  101927431  long intergenic non-protein coding RNA 1790
Aliases
GeneCards (Weizmann)LINC01790
Ensembl hg19 (Hinxton)ENSG00000230173 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000230173 [Gene_View]  chr2:194730595-194761435 [Contig_View]  LINC01790 [Vega]
ICGC DataPortalENSG00000230173
TCGA cBioPortalLINC01790
AceView (NCBI)LINC01790
Genatlas (Paris)LINC01790
WikiGenes101927431
SOURCE (Princeton)LINC01790
Genetics Home Reference (NIH)LINC01790
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01790  -     chr2:194730595-194761435 +  2q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01790  -     2q32.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01790 - 2q32.3 [CytoView hg19]  LINC01790 - 2q32.3 [CytoView hg38]
Mapping of homologs : NCBILINC01790 [Mapview hg19]  LINC01790 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056610
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01790
Cluster EST : UnigeneHs.558215 [ NCBI ]
CGAP (NCI)Hs.558215
Alternative Splicing GalleryENSG00000230173
Gene ExpressionLINC01790 [ NCBI-GEO ]   LINC01790 [ EBI - ARRAY_EXPRESS ]   LINC01790 [ SEEK ]   LINC01790 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01790 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927431
GTEX Portal (Tissue expression)LINC01790
Human Protein AtlasENSG00000230173-LINC01790 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01790
DMDM Disease mutations101927431
Blocks (Seattle)LINC01790
Human Protein Atlas [tissue]ENSG00000230173-LINC01790 [tissue]
Protein Interaction databases
FunCoupENSG00000230173
BioGRIDLINC01790
STRING (EMBL)LINC01790
ZODIACLINC01790
Ontologies - Pathways
Huge Navigator LINC01790 [HugePedia]
snp3D : Map Gene to Disease101927431
BioCentury BCIQLINC01790
ClinGenLINC01790
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927431
Clinical trialLINC01790
Miscellaneous
canSAR (ICR)LINC01790 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01790
EVEXLINC01790
GoPubMedLINC01790
iHOPLINC01790
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:05:05 CET 2017

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