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LINC01796 (long intergenic non-protein coding RNA 1796)

Identity

Other alias-
HGNC (Hugo) LINC01796
LocusID (NCBI) 105373518
Atlas_Id 79196
Location 2q12.1  [Link to chromosome band 2q12]
Location_base_pair Starts at 102873339 and ends at 102895722 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01796   52586
Cards
Entrez_Gene (NCBI)LINC01796  105373518  long intergenic non-protein coding RNA 1796
Aliases
GeneCards (Weizmann)LINC01796
Ensembl hg19 (Hinxton)ENSG00000277527 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000277527 [Gene_View]  chr2:102873339-102895722 [Contig_View]  LINC01796 [Vega]
ICGC DataPortalENSG00000277527
TCGA cBioPortalLINC01796
AceView (NCBI)LINC01796
Genatlas (Paris)LINC01796
WikiGenes105373518
SOURCE (Princeton)LINC01796
Genetics Home Reference (NIH)LINC01796
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01796  -     chr2:102873339-102895722 -  2q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01796  -     2q12.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01796 - 2q12.1 [CytoView hg19]  LINC01796 - 2q12.1 [CytoView hg38]
Mapping of homologs : NCBILINC01796 [Mapview hg19]  LINC01796 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX090679
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01796
Cluster EST : UnigeneHs.738351 [ NCBI ]
CGAP (NCI)Hs.738351
Alternative Splicing GalleryENSG00000277527
Gene ExpressionLINC01796 [ NCBI-GEO ]   LINC01796 [ EBI - ARRAY_EXPRESS ]   LINC01796 [ SEEK ]   LINC01796 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01796 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105373518
GTEX Portal (Tissue expression)LINC01796
Human Protein AtlasENSG00000277527-LINC01796 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01796
DMDM Disease mutations105373518
Blocks (Seattle)LINC01796
Human Protein Atlas [tissue]ENSG00000277527-LINC01796 [tissue]
Protein Interaction databases
FunCoupENSG00000277527
BioGRIDLINC01796
STRING (EMBL)LINC01796
ZODIACLINC01796
Ontologies - Pathways
Huge Navigator LINC01796 [HugePedia]
snp3D : Map Gene to Disease105373518
BioCentury BCIQLINC01796
ClinGenLINC01796
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105373518
Clinical trialLINC01796
Miscellaneous
canSAR (ICR)LINC01796 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01796
EVEXLINC01796
GoPubMedLINC01796
iHOPLINC01796
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:05:06 CET 2017

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