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LINC01797 (long intergenic non-protein coding RNA 1797)

Identity

Other alias-
HGNC (Hugo) LINC01797
LocusID (NCBI) 101927577
Atlas_Id 79107
Location 2p14  [Link to chromosome band 2p14]
Location_base_pair Starts at 66697030 and ends at 66703227 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01797   52587
Cards
Entrez_Gene (NCBI)LINC01797  101927577  long intergenic non-protein coding RNA 1797
Aliases
GeneCards (Weizmann)LINC01797
Ensembl hg19 (Hinxton)ENSG00000237179 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000237179 [Gene_View]  chr2:66697030-66703227 [Contig_View]  LINC01797 [Vega]
ICGC DataPortalENSG00000237179
TCGA cBioPortalLINC01797
AceView (NCBI)LINC01797
Genatlas (Paris)LINC01797
WikiGenes101927577
SOURCE (Princeton)LINC01797
Genetics Home Reference (NIH)LINC01797
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01797  -     chr2:66697030-66703227 -  2p14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01797  -     2p14   [Description]    (hg19-Feb_2009)
EnsemblLINC01797 - 2p14 [CytoView hg19]  LINC01797 - 2p14 [CytoView hg38]
Mapping of homologs : NCBILINC01797 [Mapview hg19]  LINC01797 [Mapview hg38]
Gene and transcription
Genbank (Entrez)CD557966 HY009512
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01797
Cluster EST : UnigeneHs.380543 [ NCBI ]
CGAP (NCI)Hs.380543
Alternative Splicing GalleryENSG00000237179
Gene ExpressionLINC01797 [ NCBI-GEO ]   LINC01797 [ EBI - ARRAY_EXPRESS ]   LINC01797 [ SEEK ]   LINC01797 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01797 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927577
GTEX Portal (Tissue expression)LINC01797
Human Protein AtlasENSG00000237179-LINC01797 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01797
DMDM Disease mutations101927577
Blocks (Seattle)LINC01797
Human Protein Atlas [tissue]ENSG00000237179-LINC01797 [tissue]
Protein Interaction databases
FunCoupENSG00000237179
BioGRIDLINC01797
STRING (EMBL)LINC01797
ZODIACLINC01797
Ontologies - Pathways
Huge Navigator LINC01797 [HugePedia]
snp3D : Map Gene to Disease101927577
BioCentury BCIQLINC01797
ClinGenLINC01797
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927577
Clinical trialLINC01797
Miscellaneous
canSAR (ICR)LINC01797 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01797
EVEXLINC01797
GoPubMedLINC01797
iHOPLINC01797
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:05:06 CET 2017

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