Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01798 (long intergenic non-protein coding RNA 1798)

Identity

Other alias-
HGNC (Hugo) LINC01798
LocusID (NCBI) 100507073
Atlas_Id 79980
Location 2p14  [Link to chromosome band 2p14]
Location_base_pair Starts at 66574030 and ends at 66695588 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01798   52588
Cards
Entrez_Gene (NCBI)LINC01798  100507073  long intergenic non-protein coding RNA 1798
Aliases
GeneCards (Weizmann)LINC01798
Ensembl hg19 (Hinxton)ENSG00000232046 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000232046 [Gene_View]  chr2:66574030-66695588 [Contig_View]  LINC01798 [Vega]
ICGC DataPortalENSG00000232046
TCGA cBioPortalLINC01798
AceView (NCBI)LINC01798
Genatlas (Paris)LINC01798
WikiGenes100507073
SOURCE (Princeton)LINC01798
Genetics Home Reference (NIH)LINC01798
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01798  -     chr2:66574030-66695588 +  2p14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01798  -     2p14   [Description]    (hg19-Feb_2009)
EnsemblLINC01798 - 2p14 [CytoView hg19]  LINC01798 - 2p14 [CytoView hg38]
Mapping of homologs : NCBILINC01798 [Mapview hg19]  LINC01798 [Mapview hg38]
Gene and transcription
Genbank (Entrez)CN360491 DA606892 DA610966 DA614164 DA614343
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01798
Cluster EST : UnigeneHs.667940 [ NCBI ]
CGAP (NCI)Hs.667940
Alternative Splicing GalleryENSG00000232046
Gene ExpressionLINC01798 [ NCBI-GEO ]   LINC01798 [ EBI - ARRAY_EXPRESS ]   LINC01798 [ SEEK ]   LINC01798 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01798 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100507073
GTEX Portal (Tissue expression)LINC01798
Human Protein AtlasENSG00000232046-LINC01798 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01798
DMDM Disease mutations100507073
Blocks (Seattle)LINC01798
Human Protein Atlas [tissue]ENSG00000232046-LINC01798 [tissue]
Protein Interaction databases
FunCoupENSG00000232046
BioGRIDLINC01798
STRING (EMBL)LINC01798
ZODIACLINC01798
Ontologies - Pathways
Huge Navigator LINC01798 [HugePedia]
snp3D : Map Gene to Disease100507073
BioCentury BCIQLINC01798
ClinGenLINC01798
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100507073
Clinical trialLINC01798
Miscellaneous
canSAR (ICR)LINC01798 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01798
EVEXLINC01798
GoPubMedLINC01798
iHOPLINC01798
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:40:13 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.