Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01800 (long intergenic non-protein coding RNA 1800)

Identity

Other alias-
HGNC (Hugo) LINC01800
LocusID (NCBI) 101927438
Atlas_Id 79937
Location 2p14  [Link to chromosome band 2p14]
Location_base_pair Starts at 64846130 and ends at 64863631 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01800   52590
Cards
Entrez_Gene (NCBI)LINC01800  101927438  long intergenic non-protein coding RNA 1800
Aliases
GeneCards (Weizmann)LINC01800
Ensembl hg19 (Hinxton)ENSG00000234572 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000234572 [Gene_View]  chr2:64846130-64863631 [Contig_View]  LINC01800 [Vega]
ICGC DataPortalENSG00000234572
TCGA cBioPortalLINC01800
AceView (NCBI)LINC01800
Genatlas (Paris)LINC01800
WikiGenes101927438
SOURCE (Princeton)LINC01800
Genetics Home Reference (NIH)LINC01800
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01800  -     chr2:64846130-64863631 -  2p14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01800  -     2p14   [Description]    (hg19-Feb_2009)
EnsemblLINC01800 - 2p14 [CytoView hg19]  LINC01800 - 2p14 [CytoView hg38]
Mapping of homologs : NCBILINC01800 [Mapview hg19]  LINC01800 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097952 AV712717
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01800
Cluster EST : UnigeneHs.580313 [ NCBI ]
CGAP (NCI)Hs.580313
Alternative Splicing GalleryENSG00000234572
Gene ExpressionLINC01800 [ NCBI-GEO ]   LINC01800 [ EBI - ARRAY_EXPRESS ]   LINC01800 [ SEEK ]   LINC01800 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01800 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927438
GTEX Portal (Tissue expression)LINC01800
Human Protein AtlasENSG00000234572-LINC01800 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01800
DMDM Disease mutations101927438
Blocks (Seattle)LINC01800
Human Protein Atlas [tissue]ENSG00000234572-LINC01800 [tissue]
Protein Interaction databases
FunCoupENSG00000234572
BioGRIDLINC01800
STRING (EMBL)LINC01800
ZODIACLINC01800
Ontologies - Pathways
Huge Navigator LINC01800 [HugePedia]
snp3D : Map Gene to Disease101927438
BioCentury BCIQLINC01800
ClinGenLINC01800
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927438
Clinical trialLINC01800
Miscellaneous
canSAR (ICR)LINC01800 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01800
EVEXLINC01800
GoPubMedLINC01800
iHOPLINC01800
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:40:13 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.