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LINC01808 (long intergenic non-protein coding RNA 1808)

Identity

Other alias-
HGNC (Hugo) LINC01808
LocusID (NCBI) 105373460
Atlas_Id 79577
Location 2p24.1  [Link to chromosome band 2p24]
Location_base_pair Starts at 19488194 and ends at 19489332 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC01808   52611
Cards
Entrez_Gene (NCBI)LINC01808  105373460  long intergenic non-protein coding RNA 1808
Aliases
GeneCards (Weizmann)LINC01808
Ensembl hg19 (Hinxton)ENSG00000237992 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000237992 [Gene_View]  chr2:19488194-19489332 [Contig_View]  LINC01808 [Vega]
ICGC DataPortalENSG00000237992
TCGA cBioPortalLINC01808
AceView (NCBI)LINC01808
Genatlas (Paris)LINC01808
WikiGenes105373460
SOURCE (Princeton)LINC01808
Genetics Home Reference (NIH)LINC01808
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01808  -     chr2:19488194-19489332 +  2p24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01808  -     2p24.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01808 - 2p24.1 [CytoView hg19]  LINC01808 - 2p24.1 [CytoView hg38]
Mapping of homologs : NCBILINC01808 [Mapview hg19]  LINC01808 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL117577
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01808
Cluster EST : UnigeneHs.274526 [ NCBI ]
CGAP (NCI)Hs.274526
Alternative Splicing GalleryENSG00000237992
Gene ExpressionLINC01808 [ NCBI-GEO ]   LINC01808 [ EBI - ARRAY_EXPRESS ]   LINC01808 [ SEEK ]   LINC01808 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01808 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105373460
GTEX Portal (Tissue expression)LINC01808
Human Protein AtlasENSG00000237992-LINC01808 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01808
DMDM Disease mutations105373460
Blocks (Seattle)LINC01808
Human Protein Atlas [tissue]ENSG00000237992-LINC01808 [tissue]
Protein Interaction databases
FunCoupENSG00000237992
BioGRIDLINC01808
STRING (EMBL)LINC01808
ZODIACLINC01808
Ontologies - Pathways
Huge Navigator LINC01808 [HugePedia]
snp3D : Map Gene to Disease105373460
BioCentury BCIQLINC01808
ClinGenLINC01808
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105373460
Clinical trialLINC01808
Miscellaneous
canSAR (ICR)LINC01808 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01808
EVEXLINC01808
GoPubMedLINC01808
iHOPLINC01808
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:40:15 CET 2017

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