Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01809 (long intergenic non-protein coding RNA 1809)

Identity

Other alias-
HGNC (Hugo) LINC01809
LocusID (NCBI) 101928031
Atlas_Id 80022
Location 2p11.2  [Link to chromosome band 2p11]
Location_base_pair Starts at 83522814 and ends at 83523481 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01809   52612
Cards
Entrez_Gene (NCBI)LINC01809  101928031  long intergenic non-protein coding RNA 1809
Aliases
GeneCards (Weizmann)LINC01809
Ensembl hg19 (Hinxton)ENSG00000232548 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000232548 [Gene_View]  chr2:83522814-83523481 [Contig_View]  LINC01809 [Vega]
ICGC DataPortalENSG00000232548
TCGA cBioPortalLINC01809
AceView (NCBI)LINC01809
Genatlas (Paris)LINC01809
WikiGenes101928031
SOURCE (Princeton)LINC01809
Genetics Home Reference (NIH)LINC01809
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01809  -     chr2:83522814-83523481 +  2p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC018092p11.2   [Description]    (hg19-Feb_2009)
EnsemblLINC01809 - 2p11.2 [CytoView hg19]  LINC01809 - 2p11.2 [CytoView hg38]
Mapping of homologs : NCBILINC01809 [Mapview hg19]  LINC01809 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC039486
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01809
Cluster EST : UnigeneHs.547548 [ NCBI ]
CGAP (NCI)Hs.547548
Alternative Splicing GalleryENSG00000232548
Gene ExpressionLINC01809 [ NCBI-GEO ]   LINC01809 [ EBI - ARRAY_EXPRESS ]   LINC01809 [ SEEK ]   LINC01809 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01809 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101928031
GTEX Portal (Tissue expression)LINC01809
Human Protein AtlasENSG00000232548-LINC01809 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01809
DMDM Disease mutations101928031
Blocks (Seattle)LINC01809
Human Protein Atlas [tissue]ENSG00000232548-LINC01809 [tissue]
Protein Interaction databases
FunCoupENSG00000232548
BioGRIDLINC01809
STRING (EMBL)LINC01809
ZODIACLINC01809
Ontologies - Pathways
Huge Navigator LINC01809 [HugePedia]
snp3D : Map Gene to Disease101928031
BioCentury BCIQLINC01809
ClinGenLINC01809
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101928031
Clinical trialLINC01809
Miscellaneous
canSAR (ICR)LINC01809 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01809
EVEXLINC01809
GoPubMedLINC01809
iHOPLINC01809
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:05:08 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.