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LINC01816 (long intergenic non-protein coding RNA 1816)

Identity

Other alias-
HGNC (Hugo) LINC01816
LocusID (NCBI) 100133985
Atlas_Id 79608
Location 2p13.3  [Link to chromosome band 2p13]
Location_base_pair Starts at 70124036 and ends at 70125316 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01816   52621
Cards
Entrez_Gene (NCBI)LINC01816  100133985  long intergenic non-protein coding RNA 1816
Aliases
GeneCards (Weizmann)LINC01816
Ensembl hg19 (Hinxton)ENSG00000231327 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231327 [Gene_View]  chr2:70124036-70125316 [Contig_View]  LINC01816 [Vega]
ICGC DataPortalENSG00000231327
TCGA cBioPortalLINC01816
AceView (NCBI)LINC01816
Genatlas (Paris)LINC01816
WikiGenes100133985
SOURCE (Princeton)LINC01816
Genetics Home Reference (NIH)LINC01816
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01816  -     chr2:70124036-70125316 -  2p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01816  -     2p13.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01816 - 2p13.3 [CytoView hg19]  LINC01816 - 2p13.3 [CytoView hg38]
Mapping of homologs : NCBILINC01816 [Mapview hg19]  LINC01816 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC015412
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01816
Cluster EST : UnigeneHs.135528 [ NCBI ]
CGAP (NCI)Hs.135528
Alternative Splicing GalleryENSG00000231327
Gene ExpressionLINC01816 [ NCBI-GEO ]   LINC01816 [ EBI - ARRAY_EXPRESS ]   LINC01816 [ SEEK ]   LINC01816 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01816 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100133985
GTEX Portal (Tissue expression)LINC01816
Human Protein AtlasENSG00000231327-LINC01816 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01816
DMDM Disease mutations100133985
Blocks (Seattle)LINC01816
Human Protein Atlas [tissue]ENSG00000231327-LINC01816 [tissue]
IPIIPI00981714   
Protein Interaction databases
FunCoupENSG00000231327
BioGRIDLINC01816
STRING (EMBL)LINC01816
ZODIACLINC01816
Ontologies - Pathways
Huge Navigator LINC01816 [HugePedia]
snp3D : Map Gene to Disease100133985
BioCentury BCIQLINC01816
ClinGenLINC01816
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100133985
Clinical trialLINC01816
Miscellaneous
canSAR (ICR)LINC01816 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01816
EVEXLINC01816
GoPubMedLINC01816
iHOPLINC01816
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:40:16 CET 2017

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