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LINC01817 (long intergenic non-protein coding RNA 1817)

Identity

Other alias-
HGNC (Hugo) LINC01817
LocusID (NCBI) 105373683
Atlas_Id 79971
Location 2q23.3  [Link to chromosome band 2q23]
Location_base_pair Starts at 150234892 and ends at 150257007 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC01817   52622
Cards
Entrez_Gene (NCBI)LINC01817  105373683  long intergenic non-protein coding RNA 1817
Aliases
GeneCards (Weizmann)LINC01817
Ensembl hg19 (Hinxton)ENSG00000231420 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231420 [Gene_View]  chr2:150234892-150257007 [Contig_View]  LINC01817 [Vega]
ICGC DataPortalENSG00000231420
TCGA cBioPortalLINC01817
AceView (NCBI)LINC01817
Genatlas (Paris)LINC01817
WikiGenes105373683
SOURCE (Princeton)LINC01817
Genetics Home Reference (NIH)LINC01817
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01817  -     chr2:150234892-150257007 -  2q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01817  -     2q23.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01817 - 2q23.3 [CytoView hg19]  LINC01817 - 2q23.3 [CytoView hg38]
Mapping of homologs : NCBILINC01817 [Mapview hg19]  LINC01817 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DA861647
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01817
Alternative Splicing GalleryENSG00000231420
Gene ExpressionLINC01817 [ NCBI-GEO ]   LINC01817 [ EBI - ARRAY_EXPRESS ]   LINC01817 [ SEEK ]   LINC01817 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01817 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105373683
GTEX Portal (Tissue expression)LINC01817
Human Protein AtlasENSG00000231420-LINC01817 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01817
DMDM Disease mutations105373683
Blocks (Seattle)LINC01817
Human Protein Atlas [tissue]ENSG00000231420-LINC01817 [tissue]
Protein Interaction databases
FunCoupENSG00000231420
BioGRIDLINC01817
STRING (EMBL)LINC01817
ZODIACLINC01817
Ontologies - Pathways
Huge Navigator LINC01817 [HugePedia]
snp3D : Map Gene to Disease105373683
BioCentury BCIQLINC01817
ClinGenLINC01817
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105373683
Clinical trialLINC01817
Miscellaneous
canSAR (ICR)LINC01817 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01817
EVEXLINC01817
GoPubMedLINC01817
iHOPLINC01817
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:05:09 CET 2017

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