Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01819 (long intergenic non-protein coding RNA 1819)

Identity

Other alias-
HGNC (Hugo) LINC01819
LocusID (NCBI) 102723854
Atlas_Id 79847
Location 2p21  [Link to chromosome band 2p21]
Location_base_pair Starts at 43027853 and ends at 43039543 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01819   52624
Cards
Entrez_Gene (NCBI)LINC01819  102723854  long intergenic non-protein coding RNA 1819
Aliases
GeneCards (Weizmann)LINC01819
Ensembl hg19 (Hinxton)ENSG00000231826 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231826 [Gene_View]  chr2:43027853-43039543 [Contig_View]  LINC01819 [Vega]
ICGC DataPortalENSG00000231826
TCGA cBioPortalLINC01819
AceView (NCBI)LINC01819
Genatlas (Paris)LINC01819
WikiGenes102723854
SOURCE (Princeton)LINC01819
Genetics Home Reference (NIH)LINC01819
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01819  -     chr2:43027853-43039543 -  2p21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01819  -     2p21   [Description]    (hg19-Feb_2009)
EnsemblLINC01819 - 2p21 [CytoView hg19]  LINC01819 - 2p21 [CytoView hg38]
Mapping of homologs : NCBILINC01819 [Mapview hg19]  LINC01819 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL541396 BG482349 DB233489
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01819
Cluster EST : UnigeneHs.570165 [ NCBI ]
CGAP (NCI)Hs.570165
Alternative Splicing GalleryENSG00000231826
Gene ExpressionLINC01819 [ NCBI-GEO ]   LINC01819 [ EBI - ARRAY_EXPRESS ]   LINC01819 [ SEEK ]   LINC01819 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01819 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102723854
GTEX Portal (Tissue expression)LINC01819
Human Protein AtlasENSG00000231826-LINC01819 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01819
DMDM Disease mutations102723854
Blocks (Seattle)LINC01819
Human Protein Atlas [tissue]ENSG00000231826-LINC01819 [tissue]
Protein Interaction databases
FunCoupENSG00000231826
BioGRIDLINC01819
STRING (EMBL)LINC01819
ZODIACLINC01819
Ontologies - Pathways
Huge Navigator LINC01819 [HugePedia]
snp3D : Map Gene to Disease102723854
BioCentury BCIQLINC01819
ClinGenLINC01819
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102723854
Clinical trialLINC01819
Miscellaneous
canSAR (ICR)LINC01819 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01819
EVEXLINC01819
GoPubMedLINC01819
iHOPLINC01819
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:05:10 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.