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LINC01820 (long intergenic non-protein coding RNA 1820)

Identity

Other alias-
HGNC (Hugo) LINC01820
LocusID (NCBI) 105374582
Atlas_Id 79426
Location 2p21  [Link to chromosome band 2p21]
Location_base_pair Starts at 46392293 and ends at 46394167 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC01820   52625
Cards
Entrez_Gene (NCBI)LINC01820  105374582  long intergenic non-protein coding RNA 1820
Aliases
GeneCards (Weizmann)LINC01820
Ensembl hg19 (Hinxton)ENSG00000228100 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000228100 [Gene_View]  chr2:46392293-46394167 [Contig_View]  LINC01820 [Vega]
ICGC DataPortalENSG00000228100
TCGA cBioPortalLINC01820
AceView (NCBI)LINC01820
Genatlas (Paris)LINC01820
WikiGenes105374582
SOURCE (Princeton)LINC01820
Genetics Home Reference (NIH)LINC01820
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01820  -     chr2:46392293-46394167 -  2p21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01820  -     2p21   [Description]    (hg19-Feb_2009)
EnsemblLINC01820 - 2p21 [CytoView hg19]  LINC01820 - 2p21 [CytoView hg38]
Mapping of homologs : NCBILINC01820 [Mapview hg19]  LINC01820 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA431159 AA812858
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01820
Cluster EST : UnigeneHs.570163 [ NCBI ]
CGAP (NCI)Hs.570163
Alternative Splicing GalleryENSG00000228100
Gene ExpressionLINC01820 [ NCBI-GEO ]   LINC01820 [ EBI - ARRAY_EXPRESS ]   LINC01820 [ SEEK ]   LINC01820 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01820 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105374582
GTEX Portal (Tissue expression)LINC01820
Human Protein AtlasENSG00000228100-LINC01820 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01820
DMDM Disease mutations105374582
Blocks (Seattle)LINC01820
Human Protein Atlas [tissue]ENSG00000228100-LINC01820 [tissue]
Protein Interaction databases
FunCoupENSG00000228100
BioGRIDLINC01820
STRING (EMBL)LINC01820
ZODIACLINC01820
Ontologies - Pathways
Huge Navigator LINC01820 [HugePedia]
snp3D : Map Gene to Disease105374582
BioCentury BCIQLINC01820
ClinGenLINC01820
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105374582
Clinical trialLINC01820
Miscellaneous
canSAR (ICR)LINC01820 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01820
EVEXLINC01820
GoPubMedLINC01820
iHOPLINC01820
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:40:17 CET 2017

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