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LINC01821 (long intergenic non-protein coding RNA 1821)

Identity

Other alias-
HGNC (Hugo) LINC01821
LocusID (NCBI) 101927406
Atlas_Id 79160
Location 2q32.3  [Link to chromosome band 2q32]
Location_base_pair Starts at 194344269 and ends at 194419631 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01821   52626
Cards
Entrez_Gene (NCBI)LINC01821  101927406  long intergenic non-protein coding RNA 1821
Aliases
GeneCards (Weizmann)LINC01821
Ensembl hg19 (Hinxton)ENSG00000225539 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225539 [Gene_View]  chr2:194344269-194419631 [Contig_View]  LINC01821 [Vega]
ICGC DataPortalENSG00000225539
TCGA cBioPortalLINC01821
AceView (NCBI)LINC01821
Genatlas (Paris)LINC01821
WikiGenes101927406
SOURCE (Princeton)LINC01821
Genetics Home Reference (NIH)LINC01821
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01821  -     chr2:194344269-194419631 +  2q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01821  -     2q32.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01821 - 2q32.3 [CytoView hg19]  LINC01821 - 2q32.3 [CytoView hg38]
Mapping of homologs : NCBILINC01821 [Mapview hg19]  LINC01821 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC038548 DA512861
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01821
Cluster EST : UnigeneHs.385793 [ NCBI ]
CGAP (NCI)Hs.385793
Alternative Splicing GalleryENSG00000225539
Gene ExpressionLINC01821 [ NCBI-GEO ]   LINC01821 [ EBI - ARRAY_EXPRESS ]   LINC01821 [ SEEK ]   LINC01821 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01821 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927406
GTEX Portal (Tissue expression)LINC01821
Human Protein AtlasENSG00000225539-LINC01821 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01821
DMDM Disease mutations101927406
Blocks (Seattle)LINC01821
Human Protein Atlas [tissue]ENSG00000225539-LINC01821 [tissue]
Protein Interaction databases
FunCoupENSG00000225539
BioGRIDLINC01821
STRING (EMBL)LINC01821
ZODIACLINC01821
Ontologies - Pathways
Huge Navigator LINC01821 [HugePedia]
snp3D : Map Gene to Disease101927406
BioCentury BCIQLINC01821
ClinGenLINC01821
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927406
Clinical trialLINC01821
Miscellaneous
canSAR (ICR)LINC01821 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01821
EVEXLINC01821
GoPubMedLINC01821
iHOPLINC01821
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:05:10 CET 2017

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