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LINC01822 (long intergenic non-protein coding RNA 1822)

Identity

Other alias-
HGNC (Hugo) LINC01822
LocusID (NCBI) 645949
Atlas_Id 80102
Location 2p24.1  [Link to chromosome band 2p24]
Location_base_pair Starts at 21687434 and ends at 21710652 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01822   52627
Cards
Entrez_Gene (NCBI)LINC01822  645949  long intergenic non-protein coding RNA 1822
Aliases
GeneCards (Weizmann)LINC01822
Ensembl hg19 (Hinxton)ENSG00000229621 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000229621 [Gene_View]  chr2:21687434-21710652 [Contig_View]  LINC01822 [Vega]
ICGC DataPortalENSG00000229621
TCGA cBioPortalLINC01822
AceView (NCBI)LINC01822
Genatlas (Paris)LINC01822
WikiGenes645949
SOURCE (Princeton)LINC01822
Genetics Home Reference (NIH)LINC01822
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01822  -     chr2:21687434-21710652 -  2p24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01822  -     2p24.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01822 - 2p24.1 [CytoView hg19]  LINC01822 - 2p24.1 [CytoView hg38]
Mapping of homologs : NCBILINC01822 [Mapview hg19]  LINC01822 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK090620 DB043211
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01822
Cluster EST : UnigeneHs.742487 [ NCBI ]
CGAP (NCI)Hs.742487
Alternative Splicing GalleryENSG00000229621
Gene ExpressionLINC01822 [ NCBI-GEO ]   LINC01822 [ EBI - ARRAY_EXPRESS ]   LINC01822 [ SEEK ]   LINC01822 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01822 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)645949
GTEX Portal (Tissue expression)LINC01822
Human Protein AtlasENSG00000229621-LINC01822 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01822
DMDM Disease mutations645949
Blocks (Seattle)LINC01822
Human Protein Atlas [tissue]ENSG00000229621-LINC01822 [tissue]
Protein Interaction databases
FunCoupENSG00000229621
BioGRIDLINC01822
STRING (EMBL)LINC01822
ZODIACLINC01822
Ontologies - Pathways
Huge Navigator LINC01822 [HugePedia]
snp3D : Map Gene to Disease645949
BioCentury BCIQLINC01822
ClinGenLINC01822
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD645949
Clinical trialLINC01822
Miscellaneous
canSAR (ICR)LINC01822 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01822
EVEXLINC01822
GoPubMedLINC01822
iHOPLINC01822
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:40:17 CET 2017

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