Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01828 (long intergenic non-protein coding RNA 1828)

Identity

Other alias-
HGNC (Hugo) LINC01828
LocusID (NCBI) 102800447
Atlas_Id 79537
Location 2p14  [Link to chromosome band 2p14]
Location_base_pair Starts at 67086446 and ends at 67289244 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01828   52634
Cards
Entrez_Gene (NCBI)LINC01828  102800447  long intergenic non-protein coding RNA 1828
Aliases
GeneCards (Weizmann)LINC01828
Ensembl hg19 (Hinxton)ENSG00000235885 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235885 [Gene_View]  chr2:67086446-67289244 [Contig_View]  LINC01828 [Vega]
ICGC DataPortalENSG00000235885
TCGA cBioPortalLINC01828
AceView (NCBI)LINC01828
Genatlas (Paris)LINC01828
WikiGenes102800447
SOURCE (Princeton)LINC01828
Genetics Home Reference (NIH)LINC01828
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01828  -     chr2:67086446-67289244 +  2p14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01828  -     2p14   [Description]    (hg19-Feb_2009)
EnsemblLINC01828 - 2p14 [CytoView hg19]  LINC01828 - 2p14 [CytoView hg38]
Mapping of homologs : NCBILINC01828 [Mapview hg19]  LINC01828 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC040863
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01828
Cluster EST : UnigeneHs.144196 [ NCBI ]
CGAP (NCI)Hs.144196
Alternative Splicing GalleryENSG00000235885
Gene ExpressionLINC01828 [ NCBI-GEO ]   LINC01828 [ EBI - ARRAY_EXPRESS ]   LINC01828 [ SEEK ]   LINC01828 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01828 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102800447
GTEX Portal (Tissue expression)LINC01828
Human Protein AtlasENSG00000235885-LINC01828 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01828
DMDM Disease mutations102800447
Blocks (Seattle)LINC01828
Human Protein Atlas [tissue]ENSG00000235885-LINC01828 [tissue]
Protein Interaction databases
FunCoupENSG00000235885
BioGRIDLINC01828
STRING (EMBL)LINC01828
ZODIACLINC01828
Ontologies - Pathways
Huge Navigator LINC01828 [HugePedia]
snp3D : Map Gene to Disease102800447
BioCentury BCIQLINC01828
ClinGenLINC01828
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102800447
Clinical trialLINC01828
Miscellaneous
canSAR (ICR)LINC01828 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01828
EVEXLINC01828
GoPubMedLINC01828
iHOPLINC01828
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:40:18 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.