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LINC01833 (long intergenic non-protein coding RNA 1833)

Identity

Alias_symbol (synonym)RP11-89
K21.1
Other alias
HGNC (Hugo) LINC01833
LocusID (NCBI) 107985879
Atlas_Id 79962
Location 2p21  [Link to chromosome band 2p21]
Location_base_pair Starts at 44931121 and ends at 44938888 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC01833   52644
Cards
Entrez_Gene (NCBI)LINC01833  107985879  long intergenic non-protein coding RNA 1833
AliasesK21.1; RP11-89
GeneCards (Weizmann)LINC01833
Ensembl hg19 (Hinxton)ENSG00000259439 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000259439 [Gene_View]  chr2:44931121-44938888 [Contig_View]  LINC01833 [Vega]
ICGC DataPortalENSG00000259439
TCGA cBioPortalLINC01833
AceView (NCBI)LINC01833
Genatlas (Paris)LINC01833
WikiGenes107985879
SOURCE (Princeton)LINC01833
Genetics Home Reference (NIH)LINC01833
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01833  -     chr2:44931121-44938888 -  2p21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01833  -     2p21   [Description]    (hg19-Feb_2009)
EnsemblLINC01833 - 2p21 [CytoView hg19]  LINC01833 - 2p21 [CytoView hg38]
Mapping of homologs : NCBILINC01833 [Mapview hg19]  LINC01833 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB371449 AK126832 BM664055 BU741130 CN285777
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01833
Cluster EST : UnigeneHs.515966 [ NCBI ]
CGAP (NCI)Hs.515966
Alternative Splicing GalleryENSG00000259439
Gene ExpressionLINC01833 [ NCBI-GEO ]   LINC01833 [ EBI - ARRAY_EXPRESS ]   LINC01833 [ SEEK ]   LINC01833 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01833 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)107985879
GTEX Portal (Tissue expression)LINC01833
Human Protein AtlasENSG00000259439-LINC01833 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01833
DMDM Disease mutations107985879
Blocks (Seattle)LINC01833
Human Protein Atlas [tissue]ENSG00000259439-LINC01833 [tissue]
Protein Interaction databases
FunCoupENSG00000259439
BioGRIDLINC01833
STRING (EMBL)LINC01833
ZODIACLINC01833
Ontologies - Pathways
Huge Navigator LINC01833 [HugePedia]
snp3D : Map Gene to Disease107985879
BioCentury BCIQLINC01833
ClinGenLINC01833
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD107985879
Clinical trialLINC01833
Miscellaneous
canSAR (ICR)LINC01833 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01833
EVEXLINC01833
GoPubMedLINC01833
iHOPLINC01833
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:40:18 CET 2017

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