Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01835 (long intergenic non-protein coding RNA 1835)

Identity

Other alias-
HGNC (Hugo) LINC01835
LocusID (NCBI) 102724279
Atlas_Id 79504
Location 19p13.12  [Link to chromosome band 19p13]
Location_base_pair Starts at 15851994 and ends at 15864904 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusi´n, F5simn Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01835   52651
Cards
Entrez_Gene (NCBI)LINC01835  102724279  long intergenic non-protein coding RNA 1835
Aliases
GeneCards (Weizmann)LINC01835
Ensembl hg19 (Hinxton)ENSG00000267453 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000267453 [Gene_View]  chr19:15851994-15864904 [Contig_View]  LINC01835 [Vega]
ICGC DataPortalENSG00000267453
TCGA cBioPortalLINC01835
AceView (NCBI)LINC01835
Genatlas (Paris)LINC01835
WikiGenes102724279
SOURCE (Princeton)LINC01835
Genetics Home Reference (NIH)LINC01835
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01835  -     chr19:15851994-15864904 -  19p13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01835  -     19p13.12   [Description]    (hg19-Feb_2009)
EnsemblLINC01835 - 19p13.12 [CytoView hg19]  LINC01835 - 19p13.12 [CytoView hg38]
Mapping of homologs : NCBILINC01835 [Mapview hg19]  LINC01835 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI436266 BX095604 GD139371
RefSeq transcript (Entrez)NM_001302493
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01835
Cluster EST : UnigeneHs.164360 [ NCBI ]
CGAP (NCI)Hs.164360
Alternative Splicing GalleryENSG00000267453
Gene ExpressionLINC01835 [ NCBI-GEO ]   LINC01835 [ EBI - ARRAY_EXPRESS ]   LINC01835 [ SEEK ]   LINC01835 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01835 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102724279
GTEX Portal (Tissue expression)LINC01835
Human Protein AtlasENSG00000267453-LINC01835 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01835
DMDM Disease mutations102724279
Blocks (Seattle)LINC01835
Human Protein Atlas [tissue]ENSG00000267453-LINC01835 [tissue]
Protein Interaction databases
FunCoupENSG00000267453
BioGRIDLINC01835
STRING (EMBL)LINC01835
ZODIACLINC01835
Ontologies - Pathways
Huge Navigator LINC01835 [HugePedia]
snp3D : Map Gene to Disease102724279
BioCentury BCIQLINC01835
ClinGenLINC01835
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102724279
Clinical trialLINC01835
Miscellaneous
canSAR (ICR)LINC01835 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01835
EVEXLINC01835
GoPubMedLINC01835
iHOPLINC01835
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:38:57 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.