Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01840 (long intergenic non-protein coding RNA 1840)

Identity

Alias_namesEIF2B5-AS1
EIF2B5 antisense RNA 1 (non-protein coding)
EIF2B5 antisense RNA 1
Other alias
HGNC (Hugo) LINC01840
LocusID (NCBI) 100874079
Atlas_Id 79122
Location 3q27.1  [Link to chromosome band 3q27]
Location_base_pair Starts at 184546714 and ends at 184556918 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01840   40209
Cards
Entrez_Gene (NCBI)LINC01840  100874079  long intergenic non-protein coding RNA 1840
AliasesEIF2B5-AS1
GeneCards (Weizmann)LINC01840
Ensembl hg19 (Hinxton)ENSG00000230215 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000230215 [Gene_View]  ENSG00000230215 [Sequence]  chr3:184546714-184556918 [Contig_View]  LINC01840 [Vega]
ICGC DataPortalENSG00000230215
TCGA cBioPortalLINC01840
AceView (NCBI)LINC01840
Genatlas (Paris)LINC01840
WikiGenes100874079
SOURCE (Princeton)LINC01840
Genetics Home Reference (NIH)LINC01840
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01840  -     chr3:184546714-184556918 -  3q27.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01840  -     3q27.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01840 - 3q27.1 [CytoView hg19]  LINC01840 - 3q27.1 [CytoView hg38]
Mapping of homologs : NCBILINC01840 [Mapview hg19]  LINC01840 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DA918749
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01840
Cluster EST : UnigeneHs.574899 [ NCBI ]
CGAP (NCI)Hs.574899
Alternative Splicing GalleryENSG00000230215
Gene ExpressionLINC01840 [ NCBI-GEO ]   LINC01840 [ EBI - ARRAY_EXPRESS ]   LINC01840 [ SEEK ]   LINC01840 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01840 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874079
GTEX Portal (Tissue expression)LINC01840
Human Protein AtlasENSG00000230215-LINC01840 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01840
DMDM Disease mutations100874079
Blocks (Seattle)LINC01840
Human Protein Atlas [tissue]ENSG00000230215-LINC01840 [tissue]
Protein Interaction databases
FunCoupENSG00000230215
BioGRIDLINC01840
STRING (EMBL)LINC01840
ZODIACLINC01840
Ontologies - Pathways
Huge Navigator LINC01840 [HugePedia]
snp3D : Map Gene to Disease100874079
BioCentury BCIQLINC01840
ClinGenLINC01840
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874079
Clinical trialLINC01840
Miscellaneous
canSAR (ICR)LINC01840 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01840
EVEXLINC01840
GoPubMedLINC01840
iHOPLINC01840
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:56:11 CEST 2018

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