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LINC01842 (long intergenic non-protein coding RNA 1842)

Identity

Other alias-
HGNC (Hugo) LINC01842
LocusID (NCBI) 101928845
Atlas_Id 79658
Location 19p13.12  [Link to chromosome band 19p13]
Location_base_pair Starts at 14333743 and ends at 14343913 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01842   52656
Cards
Entrez_Gene (NCBI)LINC01842  101928845  long intergenic non-protein coding RNA 1842
Aliases
GeneCards (Weizmann)LINC01842
Ensembl hg19 (Hinxton)ENSG00000267147 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000267147 [Gene_View]  chr19:14333743-14343913 [Contig_View]  LINC01842 [Vega]
ICGC DataPortalENSG00000267147
TCGA cBioPortalLINC01842
AceView (NCBI)LINC01842
Genatlas (Paris)LINC01842
WikiGenes101928845
SOURCE (Princeton)LINC01842
Genetics Home Reference (NIH)LINC01842
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01842  -     chr19:14333743-14343913 +  19p13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01842  -     19p13.12   [Description]    (hg19-Feb_2009)
EnsemblLINC01842 - 19p13.12 [CytoView hg19]  LINC01842 - 19p13.12 [CytoView hg38]
Mapping of homologs : NCBILINC01842 [Mapview hg19]  LINC01842 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC011648
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01842
Cluster EST : UnigeneHs.531617 [ NCBI ]
CGAP (NCI)Hs.531617
Alternative Splicing GalleryENSG00000267147
Gene ExpressionLINC01842 [ NCBI-GEO ]   LINC01842 [ EBI - ARRAY_EXPRESS ]   LINC01842 [ SEEK ]   LINC01842 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01842 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101928845
GTEX Portal (Tissue expression)LINC01842
Human Protein AtlasENSG00000267147-LINC01842 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01842
DMDM Disease mutations101928845
Blocks (Seattle)LINC01842
Human Protein Atlas [tissue]ENSG00000267147-LINC01842 [tissue]
Protein Interaction databases
FunCoupENSG00000267147
BioGRIDLINC01842
STRING (EMBL)LINC01842
ZODIACLINC01842
Ontologies - Pathways
Huge Navigator LINC01842 [HugePedia]
snp3D : Map Gene to Disease101928845
BioCentury BCIQLINC01842
ClinGenLINC01842
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101928845
Clinical trialLINC01842
Miscellaneous
canSAR (ICR)LINC01842 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01842
EVEXLINC01842
GoPubMedLINC01842
iHOPLINC01842
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:38:57 CET 2017

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