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LINC01843 (long intergenic non-protein coding RNA 1843)

Identity

Other alias-
HGNC (Hugo) LINC01843
LocusID (NCBI) 101927934
Atlas_Id 79191
Location 5q31.1  [Link to chromosome band 5q31]
Location_base_pair Starts at 134506552 and ends at 134509230 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01843   52659
Cards
Entrez_Gene (NCBI)LINC01843  101927934  long intergenic non-protein coding RNA 1843
Aliases
GeneCards (Weizmann)LINC01843
Ensembl hg19 (Hinxton)ENSG00000251169 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000251169 [Gene_View]  ENSG00000251169 [Sequence]  chr5:134506552-134509230 [Contig_View]  LINC01843 [Vega]
ICGC DataPortalENSG00000251169
TCGA cBioPortalLINC01843
AceView (NCBI)LINC01843
Genatlas (Paris)LINC01843
WikiGenes101927934
SOURCE (Princeton)LINC01843
Genetics Home Reference (NIH)LINC01843
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01843  -     chr5:134506552-134509230 +  5q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01843  -     5q31.1   [Description]    (hg19-Feb_2009)
LINC01843 - 5q31.1 [CytoView hg19]  LINC01843 - 5q31.1 [CytoView hg38]
Mapping of homologs : NCBILINC01843 [Mapview hg19]  LINC01843 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC032795
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01843
Cluster EST : UnigeneHs.535775 [ NCBI ]
CGAP (NCI)Hs.535775
Alternative Splicing GalleryENSG00000251169
Gene ExpressionLINC01843 [ NCBI-GEO ]   LINC01843 [ EBI - ARRAY_EXPRESS ]   LINC01843 [ SEEK ]   LINC01843 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01843 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927934
GTEX Portal (Tissue expression)LINC01843
Human Protein AtlasENSG00000251169-LINC01843 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01843
DMDM Disease mutations101927934
Blocks (Seattle)LINC01843
Human Protein Atlas [tissue]ENSG00000251169-LINC01843 [tissue]
Protein Interaction databases
FunCoupENSG00000251169
BioGRIDLINC01843
STRING (EMBL)LINC01843
ZODIACLINC01843
Ontologies - Pathways
Huge Navigator LINC01843 [HugePedia]
snp3D : Map Gene to Disease101927934
BioCentury BCIQLINC01843
ClinGenLINC01843
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927934
Clinical trialLINC01843
Miscellaneous
canSAR (ICR)LINC01843 (select the gene name)
DataMed IndexLINC01843
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01843
EVEXLINC01843
GoPubMedLINC01843
iHOPLINC01843
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Apr 30 13:35:17 CEST 2019

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