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LINC01844 (long intergenic non-protein coding RNA 1844)

Identity

Alias_symbol (synonym)LOC101926975
Other alias-
HGNC (Hugo) LINC01844
LocusID (NCBI) 101926975
Atlas_Id 78945
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 142745600 and ends at 142760993 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01844   52660
Cards
Entrez_Gene (NCBI)LINC01844  101926975  long intergenic non-protein coding RNA 1844
Aliases
GeneCards (Weizmann)LINC01844
Ensembl hg19 (Hinxton)ENSG00000236714 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000236714 [Gene_View]  ENSG00000236714 [Sequence]  chr5:142745600-142760993 [Contig_View]  LINC01844 [Vega]
ICGC DataPortalENSG00000236714
TCGA cBioPortalLINC01844
AceView (NCBI)LINC01844
Genatlas (Paris)LINC01844
WikiGenes101926975
SOURCE (Princeton)LINC01844
Genetics Home Reference (NIH)LINC01844
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01844  -     chr5:142745600-142760993 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01844  -     5q31.3   [Description]    (hg19-Feb_2009)
LINC01844 - 5q31.3 [CytoView hg19]  LINC01844 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBILINC01844 [Mapview hg19]  LINC01844 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL833138
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01844
Cluster EST : UnigeneHs.638583 [ NCBI ]
CGAP (NCI)Hs.638583
Alternative Splicing GalleryENSG00000236714
Gene ExpressionLINC01844 [ NCBI-GEO ]   LINC01844 [ EBI - ARRAY_EXPRESS ]   LINC01844 [ SEEK ]   LINC01844 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01844 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101926975
GTEX Portal (Tissue expression)LINC01844
Human Protein AtlasENSG00000236714-LINC01844 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01844
DMDM Disease mutations101926975
Blocks (Seattle)LINC01844
Human Protein Atlas [tissue]ENSG00000236714-LINC01844 [tissue]
Protein Interaction databases
FunCoupENSG00000236714
BioGRIDLINC01844
STRING (EMBL)LINC01844
ZODIACLINC01844
Ontologies - Pathways
Huge Navigator LINC01844 [HugePedia]
snp3D : Map Gene to Disease101926975
BioCentury BCIQLINC01844
ClinGenLINC01844
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101926975
Clinical trialLINC01844
Miscellaneous
canSAR (ICR)LINC01844 (select the gene name)
DataMed IndexLINC01844
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01844
EVEXLINC01844
GoPubMedLINC01844
iHOPLINC01844
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Apr 30 13:35:18 CEST 2019

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