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LINC01845 (long intergenic non-protein coding RNA 1845)

Identity

Other alias-
HGNC (Hugo) LINC01845
LocusID (NCBI) 285627
Atlas_Id 80068
Location 5q33.3  [Link to chromosome band 5q33]
Location_base_pair Starts at 159448556 and ends at 159466276 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01845   27747
Cards
Entrez_Gene (NCBI)LINC01845  285627  long intergenic non-protein coding RNA 1845
Aliases
GeneCards (Weizmann)LINC01845
Ensembl hg19 (Hinxton)ENSG00000253298 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000253298 [Gene_View]  ENSG00000253298 [Sequence]  chr5:159448556-159466276 [Contig_View]  LINC01845 [Vega]
ICGC DataPortalENSG00000253298
TCGA cBioPortalLINC01845
AceView (NCBI)LINC01845
Genatlas (Paris)LINC01845
WikiGenes285627
SOURCE (Princeton)LINC01845
Genetics Home Reference (NIH)LINC01845
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01845  -     chr5:159448556-159466276 -  5q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01845  -     5q33.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01845 - 5q33.3 [CytoView hg19]  LINC01845 - 5q33.3 [CytoView hg38]
Mapping of homologs : NCBILINC01845 [Mapview hg19]  LINC01845 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC033376
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01845
Cluster EST : UnigeneHs.552766 [ NCBI ]
CGAP (NCI)Hs.552766
Alternative Splicing GalleryENSG00000253298
Gene ExpressionLINC01845 [ NCBI-GEO ]   LINC01845 [ EBI - ARRAY_EXPRESS ]   LINC01845 [ SEEK ]   LINC01845 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01845 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)285627
GTEX Portal (Tissue expression)LINC01845
Human Protein AtlasENSG00000253298-LINC01845 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01845
DMDM Disease mutations285627
Blocks (Seattle)LINC01845
Human Protein Atlas [tissue]ENSG00000253298-LINC01845 [tissue]
IPIIPI00743920   
Protein Interaction databases
FunCoupENSG00000253298
BioGRIDLINC01845
STRING (EMBL)LINC01845
ZODIACLINC01845
Ontologies - Pathways
Huge Navigator LINC01845 [HugePedia]
snp3D : Map Gene to Disease285627
BioCentury BCIQLINC01845
ClinGenLINC01845
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285627
Clinical trialLINC01845
Miscellaneous
canSAR (ICR)LINC01845 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01845
EVEXLINC01845
GoPubMedLINC01845
iHOPLINC01845
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:56:12 CEST 2018

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