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LINC01848 (long intergenic non-protein coding RNA 1848)

Identity

Other alias-
HGNC (Hugo) LINC01848
LocusID (NCBI) 100289673
Atlas_Id 79907
Location 5q21.3  [Link to chromosome band 5q21]
Location_base_pair Starts at 109883182 and ends at 109884903 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01848   52663
Cards
Entrez_Gene (NCBI)LINC01848  100289673  long intergenic non-protein coding RNA 1848
Aliases
GeneCards (Weizmann)LINC01848
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr5:109883182-109884903 [Contig_View]  LINC01848 [Vega]
TCGA cBioPortalLINC01848
AceView (NCBI)LINC01848
Genatlas (Paris)LINC01848
WikiGenes100289673
SOURCE (Princeton)LINC01848
Genetics Home Reference (NIH)LINC01848
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01848  -     chr5:109883182-109884903 +  5q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01848  -     5q21.3   [Description]    (hg19-Feb_2009)
LINC01848 - 5q21.3 [CytoView hg19]  LINC01848 - 5q21.3 [CytoView hg38]
Mapping of homologs : NCBILINC01848 [Mapview hg19]  LINC01848 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI125295 AI216275 BX093587
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01848
Cluster EST : UnigeneHs.368405 [ NCBI ]
CGAP (NCI)Hs.368405
Gene ExpressionLINC01848 [ NCBI-GEO ]   LINC01848 [ EBI - ARRAY_EXPRESS ]   LINC01848 [ SEEK ]   LINC01848 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01848 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100289673
GTEX Portal (Tissue expression)LINC01848
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01848
DMDM Disease mutations100289673
Blocks (Seattle)LINC01848
Protein Interaction databases
BioGRIDLINC01848
STRING (EMBL)LINC01848
ZODIACLINC01848
Ontologies - Pathways
Huge Navigator LINC01848 [HugePedia]
snp3D : Map Gene to Disease100289673
BioCentury BCIQLINC01848
ClinGenLINC01848
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100289673
Clinical trialLINC01848
Miscellaneous
canSAR (ICR)LINC01848 (select the gene name)
DataMed IndexLINC01848
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01848
EVEXLINC01848
GoPubMedLINC01848
iHOPLINC01848
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Apr 30 13:35:18 CEST 2019

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