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LINC01854 (long intergenic non-protein coding RNA 1854)

Identity

Other alias-
HGNC (Hugo) LINC01854
LocusID (NCBI) 151121
Atlas_Id 78983
Location 2q21.1  [Link to chromosome band 2q21]
Location_base_pair Starts at 129242173 and ends at 129273848 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01854   52670
Cards
Entrez_Gene (NCBI)LINC01854  151121  long intergenic non-protein coding RNA 1854
Aliases
GeneCards (Weizmann)LINC01854
Ensembl hg19 (Hinxton)ENSG00000204460 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204460 [Gene_View]  chr2:129242173-129273848 [Contig_View]  LINC01854 [Vega]
ICGC DataPortalENSG00000204460
TCGA cBioPortalLINC01854
AceView (NCBI)LINC01854
Genatlas (Paris)LINC01854
WikiGenes151121
SOURCE (Princeton)LINC01854
Genetics Home Reference (NIH)LINC01854
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01854  -     chr2:129242173-129273848 -  2q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01854  -     2q21.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01854 - 2q21.1 [CytoView hg19]  LINC01854 - 2q21.1 [CytoView hg38]
Mapping of homologs : NCBILINC01854 [Mapview hg19]  LINC01854 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056598 BC093715 BC111988 DA821832 DA824517
RefSeq transcript (Entrez)NM_001033657
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01854
Cluster EST : UnigeneHs.531687 [ NCBI ]
CGAP (NCI)Hs.531687
Alternative Splicing GalleryENSG00000204460
Gene ExpressionLINC01854 [ NCBI-GEO ]   LINC01854 [ EBI - ARRAY_EXPRESS ]   LINC01854 [ SEEK ]   LINC01854 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01854 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)151121
GTEX Portal (Tissue expression)LINC01854
Human Protein AtlasENSG00000204460-LINC01854 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01854
DMDM Disease mutations151121
Blocks (Seattle)LINC01854
Human Protein Atlas [tissue]ENSG00000204460-LINC01854 [tissue]
IPIIPI00402388   
Protein Interaction databases
FunCoupENSG00000204460
BioGRIDLINC01854
STRING (EMBL)LINC01854
ZODIACLINC01854
Ontologies - Pathways
Huge Navigator LINC01854 [HugePedia]
snp3D : Map Gene to Disease151121
BioCentury BCIQLINC01854
ClinGenLINC01854
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD151121
Clinical trialLINC01854
Miscellaneous
canSAR (ICR)LINC01854 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01854
EVEXLINC01854
GoPubMedLINC01854
iHOPLINC01854
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:05:12 CET 2017

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