Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01856 (long intergenic non-protein coding RNA 1856)

Identity

Other alias-
HGNC (Hugo) LINC01856
LocusID (NCBI) 101927924
Atlas_Id 79394
Location 2q21.1  [Link to chromosome band 2q21]
Location_base_pair Starts at 129923177 and ends at 129946703 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01856   52672
Cards
Entrez_Gene (NCBI)LINC01856  101927924  long intergenic non-protein coding RNA 1856
Aliases
GeneCards (Weizmann)LINC01856
Ensembl hg19 (Hinxton)ENSG00000237574 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000237574 [Gene_View]  chr2:129923177-129946703 [Contig_View]  LINC01856 [Vega]
ICGC DataPortalENSG00000237574
TCGA cBioPortalLINC01856
AceView (NCBI)LINC01856
Genatlas (Paris)LINC01856
WikiGenes101927924
SOURCE (Princeton)LINC01856
Genetics Home Reference (NIH)LINC01856
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01856  -     chr2:129923177-129946703 +  2q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01856  -     2q21.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01856 - 2q21.1 [CytoView hg19]  LINC01856 - 2q21.1 [CytoView hg38]
Mapping of homologs : NCBILINC01856 [Mapview hg19]  LINC01856 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123402
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01856
Cluster EST : UnigeneHs.570248 [ NCBI ]
CGAP (NCI)Hs.570248
Alternative Splicing GalleryENSG00000237574
Gene ExpressionLINC01856 [ NCBI-GEO ]   LINC01856 [ EBI - ARRAY_EXPRESS ]   LINC01856 [ SEEK ]   LINC01856 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01856 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927924
GTEX Portal (Tissue expression)LINC01856
Human Protein AtlasENSG00000237574-LINC01856 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01856
DMDM Disease mutations101927924
Blocks (Seattle)LINC01856
Human Protein Atlas [tissue]ENSG00000237574-LINC01856 [tissue]
Protein Interaction databases
FunCoupENSG00000237574
BioGRIDLINC01856
STRING (EMBL)LINC01856
ZODIACLINC01856
Ontologies - Pathways
Huge Navigator LINC01856 [HugePedia]
snp3D : Map Gene to Disease101927924
BioCentury BCIQLINC01856
ClinGenLINC01856
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927924
Clinical trialLINC01856
Miscellaneous
canSAR (ICR)LINC01856 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01856
EVEXLINC01856
GoPubMedLINC01856
iHOPLINC01856
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:05:12 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.