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LINC01857 (long intergenic non-protein coding RNA 1857)

Identity

Alias_symbol (synonym)AC079767.4
Other alias-
HGNC (Hugo) LINC01857
LocusID (NCBI) 102724714
Atlas_Id 79719
Location 2q33.3  [Link to chromosome band 2q33]
Location_base_pair Starts at 207662384 and ends at 207679122 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01857   52673
Cards
Entrez_Gene (NCBI)LINC01857  102724714  long intergenic non-protein coding RNA 1857
Aliases
GeneCards (Weizmann)LINC01857
Ensembl hg19 (Hinxton)ENSG00000224137 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000224137 [Gene_View]  chr2:207662384-207679122 [Contig_View]  LINC01857 [Vega]
ICGC DataPortalENSG00000224137
TCGA cBioPortalLINC01857
AceView (NCBI)LINC01857
Genatlas (Paris)LINC01857
WikiGenes102724714
SOURCE (Princeton)LINC01857
Genetics Home Reference (NIH)LINC01857
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01857  -     chr2:207662384-207679122 +  2q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01857  -     2q33.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01857 - 2q33.3 [CytoView hg19]  LINC01857 - 2q33.3 [CytoView hg38]
Mapping of homologs : NCBILINC01857 [Mapview hg19]  LINC01857 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA769410 AA971248 AW969319
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01857
Cluster EST : UnigeneHs.443475 [ NCBI ]
CGAP (NCI)Hs.443475
Alternative Splicing GalleryENSG00000224137
Gene ExpressionLINC01857 [ NCBI-GEO ]   LINC01857 [ EBI - ARRAY_EXPRESS ]   LINC01857 [ SEEK ]   LINC01857 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01857 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102724714
GTEX Portal (Tissue expression)LINC01857
Human Protein AtlasENSG00000224137-LINC01857 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01857
DMDM Disease mutations102724714
Blocks (Seattle)LINC01857
Human Protein Atlas [tissue]ENSG00000224137-LINC01857 [tissue]
Protein Interaction databases
FunCoupENSG00000224137
BioGRIDLINC01857
STRING (EMBL)LINC01857
ZODIACLINC01857
Ontologies - Pathways
Huge Navigator LINC01857 [HugePedia]
snp3D : Map Gene to Disease102724714
BioCentury BCIQLINC01857
ClinGenLINC01857
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102724714
Clinical trialLINC01857
Miscellaneous
canSAR (ICR)LINC01857 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01857
EVEXLINC01857
GoPubMedLINC01857
iHOPLINC01857
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:40:22 CET 2017

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