Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01875 (long intergenic non-protein coding RNA 1875)

Identity

Other alias-
HGNC (Hugo) LINC01875
LocusID (NCBI) 101927362
Atlas_Id 79935
Location 2p25.3  [Link to chromosome band 2p25]
Location_base_pair Starts at 545805 and ends at 546667 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01875   52694
Cards
Entrez_Gene (NCBI)LINC01875  101927362  long intergenic non-protein coding RNA 1875
Aliases
GeneCards (Weizmann)LINC01875
Ensembl hg19 (Hinxton)ENSG00000225942 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225942 [Gene_View]  chr2:545805-546667 [Contig_View]  LINC01875 [Vega]
ICGC DataPortalENSG00000225942
TCGA cBioPortalLINC01875
AceView (NCBI)LINC01875
Genatlas (Paris)LINC01875
WikiGenes101927362
SOURCE (Princeton)LINC01875
Genetics Home Reference (NIH)LINC01875
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01875  -     chr2:545805-546667 +  2p25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01875  -     2p25.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01875 - 2p25.3 [CytoView hg19]  LINC01875 - 2p25.3 [CytoView hg38]
Mapping of homologs : NCBILINC01875 [Mapview hg19]  LINC01875 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC038187
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01875
Cluster EST : UnigeneHs.385749 [ NCBI ]
CGAP (NCI)Hs.385749
Alternative Splicing GalleryENSG00000225942
Gene ExpressionLINC01875 [ NCBI-GEO ]   LINC01875 [ EBI - ARRAY_EXPRESS ]   LINC01875 [ SEEK ]   LINC01875 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01875 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927362
GTEX Portal (Tissue expression)LINC01875
Human Protein AtlasENSG00000225942-LINC01875 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01875
DMDM Disease mutations101927362
Blocks (Seattle)LINC01875
Human Protein Atlas [tissue]ENSG00000225942-LINC01875 [tissue]
Protein Interaction databases
FunCoupENSG00000225942
BioGRIDLINC01875
STRING (EMBL)LINC01875
ZODIACLINC01875
Ontologies - Pathways
Huge Navigator LINC01875 [HugePedia]
snp3D : Map Gene to Disease101927362
BioCentury BCIQLINC01875
ClinGenLINC01875
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927362
Clinical trialLINC01875
Miscellaneous
canSAR (ICR)LINC01875 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01875
EVEXLINC01875
GoPubMedLINC01875
iHOPLINC01875
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:05:14 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.