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LINC01877 (long intergenic non-protein coding RNA 1877)

Identity

Other alias-
HGNC (Hugo) LINC01877
LocusID (NCBI) 101927641
Atlas_Id 79147
Location 2q33.1  [Link to chromosome band 2q33]
Location_base_pair Starts at 199608068 and ends at 199659132 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01877   52696
Cards
Entrez_Gene (NCBI)LINC01877  101927641  long intergenic non-protein coding RNA 1877
Aliases
GeneCards (Weizmann)LINC01877
Ensembl hg19 (Hinxton)ENSG00000238217 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000238217 [Gene_View]  chr2:199608068-199659132 [Contig_View]  LINC01877 [Vega]
ICGC DataPortalENSG00000238217
TCGA cBioPortalLINC01877
AceView (NCBI)LINC01877
Genatlas (Paris)LINC01877
WikiGenes101927641
SOURCE (Princeton)LINC01877
Genetics Home Reference (NIH)LINC01877
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01877  -     chr2:199608068-199659132 +  2q33.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01877  -     2q33.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01877 - 2q33.1 [CytoView hg19]  LINC01877 - 2q33.1 [CytoView hg38]
Mapping of homologs : NCBILINC01877 [Mapview hg19]  LINC01877 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC035629 DA215525
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01877
Cluster EST : UnigeneHs.549598 [ NCBI ]
CGAP (NCI)Hs.549598
Alternative Splicing GalleryENSG00000238217
Gene ExpressionLINC01877 [ NCBI-GEO ]   LINC01877 [ EBI - ARRAY_EXPRESS ]   LINC01877 [ SEEK ]   LINC01877 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01877 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927641
GTEX Portal (Tissue expression)LINC01877
Human Protein AtlasENSG00000238217-LINC01877 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01877
DMDM Disease mutations101927641
Blocks (Seattle)LINC01877
Human Protein Atlas [tissue]ENSG00000238217-LINC01877 [tissue]
Protein Interaction databases
FunCoupENSG00000238217
BioGRIDLINC01877
STRING (EMBL)LINC01877
ZODIACLINC01877
Ontologies - Pathways
Huge Navigator LINC01877 [HugePedia]
snp3D : Map Gene to Disease101927641
BioCentury BCIQLINC01877
ClinGenLINC01877
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927641
Clinical trialLINC01877
Miscellaneous
canSAR (ICR)LINC01877 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01877
EVEXLINC01877
GoPubMedLINC01877
iHOPLINC01877
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:05:14 CET 2017

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