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LINC01878 (long intergenic non-protein coding RNA 1878)

Identity

Other alias-
HGNC (Hugo) LINC01878
LocusID (NCBI) 102725079
Atlas_Id 78967
Location 2q34  [Link to chromosome band 2q34]
Location_base_pair Starts at 212795331 and ends at 212819263 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01878   52697
Cards
Entrez_Gene (NCBI)LINC01878  102725079  long intergenic non-protein coding RNA 1878
Aliases
GeneCards (Weizmann)LINC01878
Ensembl hg19 (Hinxton)ENSG00000234308 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000234308 [Gene_View]  chr2:212795331-212819263 [Contig_View]  LINC01878 [Vega]
ICGC DataPortalENSG00000234308
TCGA cBioPortalLINC01878
AceView (NCBI)LINC01878
Genatlas (Paris)LINC01878
WikiGenes102725079
SOURCE (Princeton)LINC01878
Genetics Home Reference (NIH)LINC01878
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01878  -     chr2:212795331-212819263 +  2q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01878  -     2q34   [Description]    (hg19-Feb_2009)
EnsemblLINC01878 - 2q34 [CytoView hg19]  LINC01878 - 2q34 [CytoView hg38]
Mapping of homologs : NCBILINC01878 [Mapview hg19]  LINC01878 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI024749 BU568182 BX094204
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01878
Cluster EST : UnigeneHs.176124 [ NCBI ]
CGAP (NCI)Hs.176124
Alternative Splicing GalleryENSG00000234308
Gene ExpressionLINC01878 [ NCBI-GEO ]   LINC01878 [ EBI - ARRAY_EXPRESS ]   LINC01878 [ SEEK ]   LINC01878 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01878 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102725079
GTEX Portal (Tissue expression)LINC01878
Human Protein AtlasENSG00000234308-LINC01878 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01878
DMDM Disease mutations102725079
Blocks (Seattle)LINC01878
Human Protein Atlas [tissue]ENSG00000234308-LINC01878 [tissue]
Protein Interaction databases
FunCoupENSG00000234308
BioGRIDLINC01878
STRING (EMBL)LINC01878
ZODIACLINC01878
Ontologies - Pathways
Huge Navigator LINC01878 [HugePedia]
snp3D : Map Gene to Disease102725079
BioCentury BCIQLINC01878
ClinGenLINC01878
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102725079
Clinical trialLINC01878
Miscellaneous
canSAR (ICR)LINC01878 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01878
EVEXLINC01878
GoPubMedLINC01878
iHOPLINC01878
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:05:14 CET 2017

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