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LINC01879 (long intergenic non-protein coding RNA 1879)

Identity

Other alias-
HGNC (Hugo) LINC01879
LocusID (NCBI) 400661
Atlas_Id 79282
Location 18q23  [Link to chromosome band 18q23]
Location_base_pair Starts at 76690029 and ends at 76693636 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01879   52698
Cards
Entrez_Gene (NCBI)LINC01879  400661  long intergenic non-protein coding RNA 1879
Aliases
GeneCards (Weizmann)LINC01879
Ensembl hg19 (Hinxton)ENSG00000276397 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000276397 [Gene_View]  chr18:76690029-76693636 [Contig_View]  LINC01879 [Vega]
ICGC DataPortalENSG00000276397
TCGA cBioPortalLINC01879
AceView (NCBI)LINC01879
Genatlas (Paris)LINC01879
WikiGenes400661
SOURCE (Princeton)LINC01879
Genetics Home Reference (NIH)LINC01879
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01879  -     chr18:76690029-76693636 +  18q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01879  -     18q23   [Description]    (hg19-Feb_2009)
EnsemblLINC01879 - 18q23 [CytoView hg19]  LINC01879 - 18q23 [CytoView hg38]
Mapping of homologs : NCBILINC01879 [Mapview hg19]  LINC01879 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK126829 BC119774 BC119776
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01879
Cluster EST : UnigeneHs.514963 [ NCBI ]
CGAP (NCI)Hs.514963
Alternative Splicing GalleryENSG00000276397
Gene ExpressionLINC01879 [ NCBI-GEO ]   LINC01879 [ EBI - ARRAY_EXPRESS ]   LINC01879 [ SEEK ]   LINC01879 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01879 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400661
GTEX Portal (Tissue expression)LINC01879
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZT83   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZT83  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZT83
Splice isoforms : SwissVarQ6ZT83
PhosPhoSitePlusQ6ZT83
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01879
DMDM Disease mutations400661
Blocks (Seattle)LINC01879
SuperfamilyQ6ZT83
Human Protein AtlasENSG00000276397
Peptide AtlasQ6ZT83
IPIIPI00401976   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZT83
IntAct (EBI)Q6ZT83
FunCoupENSG00000276397
BioGRIDLINC01879
STRING (EMBL)LINC01879
ZODIACLINC01879
Ontologies - Pathways
QuickGOQ6ZT83
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC01879
Atlas of Cancer Signalling NetworkLINC01879
Wikipedia pathwaysLINC01879
Orthology - Evolution
OrthoDB400661
GeneTree (enSembl)ENSG00000276397
Phylogenetic Trees/Animal Genes : TreeFamLINC01879
HOVERGENQ6ZT83
HOGENOMQ6ZT83
Homologs : HomoloGeneLINC01879
Homology/Alignments : Family Browser (UCSC)LINC01879
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC01879 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC01879
dbVarLINC01879
ClinVarLINC01879
1000_GenomesLINC01879 
Exome Variant ServerLINC01879
ExAC (Exome Aggregation Consortium)LINC01879 (select the gene name)
Genetic variants : HAPMAP400661
Genomic Variants (DGV)LINC01879 [DGVbeta]
DECIPHERLINC01879 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC01879 
Mutations
ICGC Data PortalLINC01879 
TCGA Data PortalLINC01879 
Broad Tumor PortalLINC01879
OASIS PortalLINC01879 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC01879
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC01879
DgiDB (Drug Gene Interaction Database)LINC01879
DoCM (Curated mutations)LINC01879 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC01879 (select a term)
intoGenLINC01879
Cancer3DLINC01879(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC01879
Genetic Testing Registry LINC01879
NextProtQ6ZT83 [Medical]
TSGene400661
GENETestsLINC01879
Target ValidationLINC01879
Huge Navigator LINC01879 [HugePedia]
snp3D : Map Gene to Disease400661
BioCentury BCIQLINC01879
ClinGenLINC01879
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400661
Clinical trialLINC01879
Miscellaneous
canSAR (ICR)LINC01879 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01879
EVEXLINC01879
GoPubMedLINC01879
iHOPLINC01879
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:15:28 CEST 2017

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