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LINC01880 (long intergenic non-protein coding RNA 1880)

Identity

Other alias-
HGNC (Hugo) LINC01880
LocusID (NCBI) 105373979
Atlas_Id 79339
Location 2q37.3  [Link to chromosome band 2q37]
Location_base_pair Starts at 242047684 and ends at 242084138 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01880   52699
Cards
Entrez_Gene (NCBI)LINC01880  105373979  long intergenic non-protein coding RNA 1880
Aliases
GeneCards (Weizmann)LINC01880
Ensembl hg19 (Hinxton)ENSG00000232002 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000232002 [Gene_View]  chr2:242047684-242084138 [Contig_View]  LINC01880 [Vega]
ICGC DataPortalENSG00000232002
TCGA cBioPortalLINC01880
AceView (NCBI)LINC01880
Genatlas (Paris)LINC01880
WikiGenes105373979
SOURCE (Princeton)LINC01880
Genetics Home Reference (NIH)LINC01880
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01880  -     chr2:242047684-242084138 -  2q37.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01880  -     2q37.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01880 - 2q37.3 [CytoView hg19]  LINC01880 - 2q37.3 [CytoView hg38]
Mapping of homologs : NCBILINC01880 [Mapview hg19]  LINC01880 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000002 NT_187523 NT_187647
Consensus coding sequences : CCDS (NCBI)LINC01880
Alternative Splicing GalleryENSG00000232002
Gene ExpressionLINC01880 [ NCBI-GEO ]   LINC01880 [ EBI - ARRAY_EXPRESS ]   LINC01880 [ SEEK ]   LINC01880 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01880 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105373979
GTEX Portal (Tissue expression)LINC01880
Human Protein AtlasENSG00000232002-LINC01880 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01880
DMDM Disease mutations105373979
Blocks (Seattle)LINC01880
Human Protein Atlas [tissue]ENSG00000232002-LINC01880 [tissue]
Protein Interaction databases
FunCoupENSG00000232002
BioGRIDLINC01880
STRING (EMBL)LINC01880
ZODIACLINC01880
Ontologies - Pathways
Huge Navigator LINC01880 [HugePedia]
snp3D : Map Gene to Disease105373979
BioCentury BCIQLINC01880
ClinGenLINC01880
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105373979
Clinical trialLINC01880
Miscellaneous
canSAR (ICR)LINC01880 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01880
EVEXLINC01880
GoPubMedLINC01880
iHOPLINC01880
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:40:26 CET 2017

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