Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01881 (long intergenic non-protein coding RNA 1881)

Identity

Other alias-
HGNC (Hugo) LINC01881
LocusID (NCBI) 728323
Atlas_Id 79244
Location 2q37.3  [Link to chromosome band 2q37]
Location_base_pair Starts at 242088633 and ends at 242160503 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer,$TCGA"fesion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01881   52700
Cards
Entrez_Gene (NCBI)LINC01881  728323  long intergenic non-protein coding RNA 1881
Aliases
GeneCards (Weizmann)LINC01881
Ensembl hg19 (Hinxton)ENSG00000220804 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000220804 [Gene_View]  chr2:242088633-242160503 [Contig_View]  LINC01881 [Vega]
ICGC DataPortalENSG00000220804
TCGA cBioPortalLINC01881
AceView (NCBI)LINC01881
Genatlas (Paris)LINC01881
WikiGenes728323
SOURCE (Princeton)LINC01881
Genetics Home Reference (NIH)LINC01881
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01881  -     chr2:242088633-242160503 +  2q37.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01881  -     2q37.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01881 - 2q37.3 [CytoView hg19]  LINC01881 - 2q37.3 [CytoView hg38]
Mapping of homologs : NCBILINC01881 [Mapview hg19]  LINC01881 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK125248 AK298283 AK307199 AK309231 BC090920
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_187523 NT_187647
Consensus coding sequences : CCDS (NCBI)LINC01881
Cluster EST : UnigeneHs.471887 [ NCBI ]
CGAP (NCI)Hs.471887
Alternative Splicing GalleryENSG00000220804
Gene ExpressionLINC01881 [ NCBI-GEO ]   LINC01881 [ EBI - ARRAY_EXPRESS ]   LINC01881 [ SEEK ]   LINC01881 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01881 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)728323
GTEX Portal (Tissue expression)LINC01881
Human Protein AtlasENSG00000220804-LINC01881 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01881
DMDM Disease mutations728323
Blocks (Seattle)LINC01881
Human Protein Atlas [tissue]ENSG00000220804-LINC01881 [tissue]
Protein Interaction databases
FunCoupENSG00000220804
BioGRIDLINC01881
STRING (EMBL)LINC01881
ZODIACLINC01881
Ontologies - Pathways
Huge Navigator LINC01881 [HugePedia]
snp3D : Map Gene to Disease728323
BioCentury BCIQLINC01881
ClinGenLINC01881
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728323
Clinical trialLINC01881
Miscellaneous
canSAR (ICR)LINC01881 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01881
EVEXLINC01881
GoPubMedLINC01881
iHOPLINC01881
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:05:15 CET 2017

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