Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01883 (long intergenic non-protein coding RNA 1883)

Identity

Other alias-
HGNC (Hugo) LINC01883
LocusID (NCBI) 100996902
Atlas_Id 79905
Location 2p22.1  [Link to chromosome band 2p22]
Location_base_pair Starts at 38431294 and ends at 38433573 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01883   52702
Cards
Entrez_Gene (NCBI)LINC01883  100996902  long intergenic non-protein coding RNA 1883
Aliases
GeneCards (Weizmann)LINC01883
Ensembl hg19 (Hinxton)ENSG00000235009 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235009 [Gene_View]  chr2:38431294-38433573 [Contig_View]  LINC01883 [Vega]
ICGC DataPortalENSG00000235009
TCGA cBioPortalLINC01883
AceView (NCBI)LINC01883
Genatlas (Paris)LINC01883
WikiGenes100996902
SOURCE (Princeton)LINC01883
Genetics Home Reference (NIH)LINC01883
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01883  -     chr2:38431294-38433573 +  2p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01883  -     2p22.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01883 - 2p22.1 [CytoView hg19]  LINC01883 - 2p22.1 [CytoView hg38]
Mapping of homologs : NCBILINC01883 [Mapview hg19]  LINC01883 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA973088 AW082227
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01883
Cluster EST : UnigeneHs.128280 [ NCBI ]
CGAP (NCI)Hs.128280
Alternative Splicing GalleryENSG00000235009
Gene ExpressionLINC01883 [ NCBI-GEO ]   LINC01883 [ EBI - ARRAY_EXPRESS ]   LINC01883 [ SEEK ]   LINC01883 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01883 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100996902
GTEX Portal (Tissue expression)LINC01883
Human Protein AtlasENSG00000235009-LINC01883 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01883
DMDM Disease mutations100996902
Blocks (Seattle)LINC01883
Human Protein Atlas [tissue]ENSG00000235009-LINC01883 [tissue]
Protein Interaction databases
FunCoupENSG00000235009
BioGRIDLINC01883
STRING (EMBL)LINC01883
ZODIACLINC01883
Ontologies - Pathways
Huge Navigator LINC01883 [HugePedia]
snp3D : Map Gene to Disease100996902
BioCentury BCIQLINC01883
ClinGenLINC01883
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100996902
Clinical trialLINC01883
Miscellaneous
canSAR (ICR)LINC01883 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01883
EVEXLINC01883
GoPubMedLINC01883
iHOPLINC01883
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:05:15 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.