Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01884 (long intergenic non-protein coding RNA 1884)

Identity

Other alias-
HGNC (Hugo) LINC01884
LocusID (NCBI) 102723362
Atlas_Id 79569
Location 2p24.1  [Link to chromosome band 2p24]
Location_base_pair Starts at 22536479 and ends at 22538287 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01884   52703
Cards
Entrez_Gene (NCBI)LINC01884  102723362  long intergenic non-protein coding RNA 1884
Aliases
GeneCards (Weizmann)LINC01884
Ensembl hg19 (Hinxton)ENSG00000233587 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000233587 [Gene_View]  chr2:22536479-22538287 [Contig_View]  LINC01884 [Vega]
ICGC DataPortalENSG00000233587
TCGA cBioPortalLINC01884
AceView (NCBI)LINC01884
Genatlas (Paris)LINC01884
WikiGenes102723362
SOURCE (Princeton)LINC01884
Genetics Home Reference (NIH)LINC01884
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01884  -     chr2:22536479-22538287 +  2p24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01884  -     2p24.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01884 - 2p24.1 [CytoView hg19]  LINC01884 - 2p24.1 [CytoView hg38]
Mapping of homologs : NCBILINC01884 [Mapview hg19]  LINC01884 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA781119
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01884
Cluster EST : UnigeneHs.502887 [ NCBI ]
CGAP (NCI)Hs.502887
Alternative Splicing GalleryENSG00000233587
Gene ExpressionLINC01884 [ NCBI-GEO ]   LINC01884 [ EBI - ARRAY_EXPRESS ]   LINC01884 [ SEEK ]   LINC01884 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01884 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102723362
GTEX Portal (Tissue expression)LINC01884
Human Protein AtlasENSG00000233587-LINC01884 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01884
DMDM Disease mutations102723362
Blocks (Seattle)LINC01884
Human Protein Atlas [tissue]ENSG00000233587-LINC01884 [tissue]
Protein Interaction databases
FunCoupENSG00000233587
BioGRIDLINC01884
STRING (EMBL)LINC01884
ZODIACLINC01884
Ontologies - Pathways
Huge Navigator LINC01884 [HugePedia]
snp3D : Map Gene to Disease102723362
BioCentury BCIQLINC01884
ClinGenLINC01884
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102723362
Clinical trialLINC01884
Miscellaneous
canSAR (ICR)LINC01884 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01884
EVEXLINC01884
GoPubMedLINC01884
iHOPLINC01884
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:05:15 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.